Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 1
- nucleus 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| CDY01311 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G49840.1 | CDY01311 | AT1G21840.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY32838 | Canola | plastid | 96.24 | 95.6 |
| Bra014219.1-P | Field mustard | plastid | 99.34 | 92.01 |
| AT1G49840.1 | Thale cress | plastid | 82.96 | 75.91 |
| CDY50147 | Canola | mitochondrion | 73.45 | 75.63 |
| CDX95439 | Canola | mitochondrion | 72.57 | 75.4 |
| CDY67693 | Canola | mitochondrion | 73.23 | 72.91 |
| CDY46168 | Canola | mitochondrion | 73.45 | 72.81 |
| VIT_03s0091g00410.t01 | Wine grape | plastid | 72.12 | 68.63 |
| PGSC0003DMT400066530 | Potato | plastid | 71.24 | 68.51 |
| Solyc01g107350.2.1 | Tomato | plastid | 71.02 | 68.3 |
| KRG91072 | Soybean | plastid | 69.69 | 68.03 |
| KRH35700 | Soybean | plastid | 69.47 | 67.97 |
| Os12t0581300-01 | Rice | cytosol | 23.23 | 66.46 |
| GSMUA_Achr3P02230_001 | Banana | cytosol, plastid | 44.25 | 65.15 |
| GSMUA_Achr4P32590_001 | Banana | cytosol | 64.38 | 64.38 |
| GSMUA_Achr4P14230_001 | Banana | cytosol, mitochondrion, nucleus, peroxisome | 64.6 | 63.76 |
| GSMUA_Achr6P16820_001 | Banana | cytosol | 61.5 | 63.04 |
| OQU79433 | Sorghum | cytosol | 61.06 | 61.47 |
| GSMUA_Achr6P24020_001 | Banana | cytosol | 54.42 | 61.35 |
| GSMUA_Achr10P... | Banana | cytosol | 52.65 | 61.18 |
| Os03t0606100-01 | Rice | cytosol | 59.51 | 61.14 |
| GSMUA_Achr10P... | Banana | plastid | 56.64 | 61.1 |
| TraesCS4D01G076200.1 | Wheat | cytosol, mitochondrion | 61.28 | 60.61 |
| TraesCS4B01G077800.1 | Wheat | cytosol | 61.06 | 60.39 |
| TraesCS4A01G237300.1 | Wheat | cytosol, mitochondrion | 61.06 | 60.39 |
| TraesCS5B01G078600.2 | Wheat | cytosol | 57.3 | 60.23 |
| HORVU5Hr1G018870.3 | Barley | cytosol, mitochondrion | 61.28 | 60.22 |
| TraesCS5A01G072300.1 | Wheat | cytosol | 60.84 | 59.4 |
| TraesCS5D01G085100.1 | Wheat | cytosol | 60.84 | 59.4 |
| GSMUA_Achr2P21540_001 | Banana | plastid | 56.86 | 58.81 |
| EER91248 | Sorghum | cytosol | 60.4 | 58.46 |
| GSMUA_Achr7P26350_001 | Banana | cytosol, mitochondrion, peroxisome, plastid | 61.73 | 58.12 |
| GSMUA_Achr7P00620_001 | Banana | mitochondrion | 51.99 | 57.74 |
| TraesCS2D01G192800.1 | Wheat | nucleus | 64.6 | 57.71 |
| TraesCS2B01G211900.1 | Wheat | nucleus | 64.6 | 57.37 |
| TraesCS2A01G194900.1 | Wheat | nucleus | 64.38 | 57.28 |
| Zm00001d013746_P001 | Maize | cytosol | 58.63 | 57.24 |
| GSMUA_Achr2P13470_001 | Banana | cytosol | 55.31 | 56.95 |
| CDY03939 | Canola | cytosol | 14.82 | 56.78 |
| Os07t0591100-01 | Rice | nucleus | 65.04 | 56.76 |
| OQU92347 | Sorghum | mitochondrion, plastid | 60.84 | 56.47 |
| Zm00001d030837_P001 | Maize | cytosol, mitochondrion | 59.29 | 56.07 |
| EER99634 | Sorghum | nucleus | 64.38 | 55.75 |
| Zm00001d047324_P001 | Maize | cytosol | 60.4 | 55.71 |
| Zm00001d016585_P002 | Maize | extracellular, plasma membrane | 30.53 | 54.55 |
| Zm00001d006749_P001 | Maize | cytosol | 62.61 | 53.8 |
| Zm00001d022006_P001 | Maize | cytosol, plastid | 64.38 | 52.24 |
| HORVU4Hr1G013190.8 | Barley | mitochondrion | 56.86 | 50.89 |
| CDY67976 | Canola | mitochondrion, plastid | 53.1 | 47.34 |
| CDX90103 | Canola | mitochondrion, plastid | 52.88 | 47.14 |
| CDY68684 | Canola | cytosol, mitochondrion | 28.1 | 44.41 |
| CDY30758 | Canola | cytosol | 35.18 | 43.09 |
| CDY53851 | Canola | cytosol | 35.18 | 43.09 |
| CDY52160 | Canola | cytosol | 34.73 | 42.55 |
| CDX87382 | Canola | mitochondrion | 39.16 | 42.45 |
| CDX88540 | Canola | mitochondrion | 39.16 | 42.45 |
| CDY49838 | Canola | cytosol | 34.51 | 42.28 |
| CDY55767 | Canola | cytosol | 34.29 | 42.12 |
| CDX81011 | Canola | cytosol | 34.29 | 42.12 |
| CDX79318 | Canola | cytosol | 7.96 | 41.86 |
| CDY27272 | Canola | cytosol, nucleus, plastid | 37.17 | 38.71 |
| CDX70123 | Canola | cytosol | 37.39 | 38.15 |
| CDY02955 | Canola | cytosol, nucleus, plastid | 34.07 | 38.12 |
| CDX98870 | Canola | cytosol | 37.39 | 38.06 |
| CDX76076 | Canola | cytosol, nucleus, plastid | 33.85 | 37.87 |
| CDX68146 | Canola | cytosol | 30.97 | 37.04 |
| CDY46011 | Canola | cytosol | 32.3 | 36.87 |
| CDY37259 | Canola | cytosol | 32.3 | 36.87 |
Protein Annotations
| EnsemblPlants:CDY16530 | EnsemblPlantsGene:GSBRNA2T00091142001 | InterPro:DUF620 | PANTHER:PTHR31300 | PANTHER:PTHR31300:SF1 | PFAM:PF04788 |
| ProteinID:CDY16530 | ProteinID:CDY16530.1 | SEG:seg | UniParc:UPI0004EF3DA4 | UniProt:A0A078FQ21 | MapMan:27.4.5.3 |
Description
BnaA08g02370DBnaA08g02370D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FQ21]
Coordinates
chrLK032064:+:735338..737215
Molecular Weight (calculated)
49833.2 Da
IEP (calculated)
9.138
GRAVY (calculated)
-0.455
Length
452 amino acids
Sequence
(BLAST)
(BLAST)
001: MEMEKKQGFF SALRDEVIRS FTPSRSRPRS RSASPRTAAG GYHLASQPEP LIGRSESLRP VIEGPDPDND ETQTDSKRIG SGLGHWVKGQ MSRAPSVAST
101: RSDLRLLLGV LGAPLAPIKL SSSVRDSHIE TSTAQYILQQ YTAASGGQKL QSSVKNAYAN GKVKMITSEL ETPTRTVRNR NPTKPETGGF VLWQMNPDMW
201: YVELSVGSSK VRAGCNGKLV WRHTPWLGSH TANGPVRPLR RALQGLDPRT TAAIFAESKC VGEKKVNGED CFILKLCTDP GTLKARSEGP AEIVRHILFG
301: YFSQRTGLLV QFEDSQLTRI QSNSGDAVYW ETTINSSLED YRQVEGIMIA HSGRSVVTLF RFGEVAMSHT RTKMEERWTI EEVAFNVPGL SPDCFIPPAD
401: LRSSSLLTEA CEYSDREEKG KSSIMLAAHR AKVAALEKGN LGNDHPVWQI DV
101: RSDLRLLLGV LGAPLAPIKL SSSVRDSHIE TSTAQYILQQ YTAASGGQKL QSSVKNAYAN GKVKMITSEL ETPTRTVRNR NPTKPETGGF VLWQMNPDMW
201: YVELSVGSSK VRAGCNGKLV WRHTPWLGSH TANGPVRPLR RALQGLDPRT TAAIFAESKC VGEKKVNGED CFILKLCTDP GTLKARSEGP AEIVRHILFG
301: YFSQRTGLLV QFEDSQLTRI QSNSGDAVYW ETTINSSLED YRQVEGIMIA HSGRSVVTLF RFGEVAMSHT RTKMEERWTI EEVAFNVPGL SPDCFIPPAD
401: LRSSSLLTEA CEYSDREEKG KSSIMLAAHR AKVAALEKGN LGNDHPVWQI DV
001: MEKKQGFFSS LRDEVVRGLS PSRSRPRSRS ASPSRSTTPH MKALLWGRKK LIASSGCSGG GGVIGGERGG YYLSQPEPFI GRSSSLRPVM EGPDPDNGEV
101: SGVDSKRLGS GLSHWVKGQW SRAPSVTSTT PAYRKSDLRL LLGVMGAPLA PINVSSSSHL LHLTIRDSPT ETSSAQYILQ QYTAACGGHK LHNAIKNAYA
201: MGKLKMITSE LETPTGTVRN RNSTKSETGG FVLWQMNPDM WYVELSVGGS KVRAGCNGKL VWRHTPWLGS HTAKGPVRPL RRALQGLDPR TTATMFAESK
301: CVGERKVNGE DCFILKLCTD PETLRARSEG PAEIVRHILF GYFSQRTGLL AQIEDSQLTR IQSNDGDAVY WETTINSSLD DYKQVEGIMI AHSGRSVVTL
401: FRFGEVAMSH TRTKMEERWT IEEVAFNVPG LSLDCFIPPA DLRSGSLTEA CEYSGQEEKG KSSLALASTT AHRAKVAALE KGSFDNDPVW HIDV
101: SGVDSKRLGS GLSHWVKGQW SRAPSVTSTT PAYRKSDLRL LLGVMGAPLA PINVSSSSHL LHLTIRDSPT ETSSAQYILQ QYTAACGGHK LHNAIKNAYA
201: MGKLKMITSE LETPTGTVRN RNSTKSETGG FVLWQMNPDM WYVELSVGGS KVRAGCNGKL VWRHTPWLGS HTAKGPVRPL RRALQGLDPR TTATMFAESK
301: CVGERKVNGE DCFILKLCTD PETLRARSEG PAEIVRHILF GYFSQRTGLL AQIEDSQLTR IQSNDGDAVY WETTINSSLD DYKQVEGIMI AHSGRSVVTL
401: FRFGEVAMSH TRTKMEERWT IEEVAFNVPG LSLDCFIPPA DLRSGSLTEA CEYSGQEEKG KSSLALASTT AHRAKVAALE KGSFDNDPVW HIDV
Arabidopsis Description
Glutamyl-tRNA (Gln) amidotransferase subunit A (DUF620) [Source:UniProtKB/TrEMBL;Acc:Q9C6D0]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.