CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, plastid

Predictor Summary:

nucleus 2
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX76076	Canola	cytosol, nucleus, plastid	97.03	97.03
Bra014725.1-P	Field mustard	nucleus	96.04	90.23
CDY27272	Canola	cytosol, nucleus, plastid	90.84	84.56
AT3G55720.1	Thale cress	nucleus	87.13	80.37
VIT_13s0019g03180.t01	Wine grape	cytosol	53.71	50.94
Solyc03g078650.2.1	Tomato	cytosol, nucleus, plastid	51.73	49.76
PGSC0003DMT400059652	Potato	cytosol	51.49	49.64
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	46.04	49.08
KRH73113	Soybean	cytosol	50.99	48.58
CDX70123	Canola	cytosol	52.72	48.08
CDX98870	Canola	cytosol	52.72	47.97
KRH15018	Soybean	cytosol	50.49	47.78
KRG97798	Soybean	cytosol	50.99	46.92
KRH31070	Soybean	cytosol	50.25	46.56
Solyc05g052860.2.1	Tomato	cytosol	50.99	46.5
PGSC0003DMT400069765	Potato	cytosol	50.49	45.95
PGSC0003DMT400069768	Potato	cytosol	22.77	45.77
GSMUA_Achr5P28960_001	Banana	cytosol	48.27	44.72
CDY68684	Canola	cytosol, mitochondrion	31.19	44.06
CDY53851	Canola	cytosol	40.1	43.9
CDY52160	Canola	cytosol	40.1	43.9
CDY49838	Canola	cytosol	40.1	43.9
CDY30758	Canola	cytosol	40.1	43.9
CDX68146	Canola	cytosol	40.59	43.39
GSMUA_Achr6P33890_001	Banana	cytosol	41.09	43.34
CDY46011	Canola	cytosol	42.33	43.18
CDY37259	Canola	cytosol	42.33	43.18
TraesCS4B01G211300.1	Wheat	cytosol, nucleus, plastid	47.28	42.83
TraesCS4A01G093200.1	Wheat	cytosol, nucleus, plastid	46.78	42.28
TraesCS4D01G211900.1	Wheat	cytosol, nucleus, plastid	47.03	42.22
Os03t0267500-01	Rice	plasma membrane	45.3	41.5
EER95119	Sorghum	cytosol	44.55	40.63
Zm00001d047840_P001	Maize	cytosol, peroxisome, plastid	45.3	40.22
Zm00001d028565_P002	Maize	cytosol	45.79	40.22
HORVU4Hr1G060590.5	Barley	mitochondrion	46.29	37.4
CDY50147	Canola	mitochondrion	40.59	37.36
CDX95439	Canola	mitochondrion	39.85	37.01
CDY03939	Canola	cytosol	10.64	36.44
CDY67693	Canola	mitochondrion	39.85	35.46
CDY46168	Canola	mitochondrion	39.85	35.31
CDY16530	Canola	plastid	38.12	34.07
CDY32838	Canola	plastid	38.37	34.07
CDY67976	Canola	mitochondrion, plastid	36.88	29.39
CDX90103	Canola	mitochondrion, plastid	36.88	29.39
CDY55767	Canola	cytosol	26.24	28.8
CDX81011	Canola	cytosol	26.24	28.8
CDX88540	Canola	mitochondrion	29.7	28.78
CDX87382	Canola	mitochondrion	29.7	28.78
CDX79318	Canola	cytosol	4.21	19.77

Protein Annotations

EnsemblPlants:CDY02955	EnsemblPlantsGene:GSBRNA2T00115241001	InterPro:DUF620	PANTHER:PTHR31300	PANTHER:PTHR31300:SF2	PFAM:PF04788
ProteinID:CDY02955	ProteinID:CDY02955.1	SEG:seg	UniParc:UPI0004EBB4C3	MapMan:27.4.5.3	:

Description

BnaC04g25310D

Coordinates

chrLK031938:+:1045296..1047174

Molecular Weight (calculated)

44455.4 Da

IEP (calculated)

5.381

GRAVY (calculated)

-0.307

Length

404 amino acids

Sequence
(BLAST)

001: MRTLCPNFDR EDGLETVLEV PMPEELFCSE NNKTGSWRSV KTSLLRSPPD NNSSLSTLFG GRDAQIQMLL GIVGAPLIPL PVSSDHDVLD HPMPKLIKNQ
101: SIEAAMAKYI VKQYTAASGG EVALDRVESM YAMGKVKMGV TEFCAAKTQI GKRKKKMVRI KNLNNGNGGE MGGFVLWKKG SSQWSLELVV SGCKVSAGCD
201: GLDPKTTANM FAGSVCVGEK VVNDEECFVL KLETQTSGLK SRSKGGMETV KHTVWGCFSQ RTGLLVKLED TYLVRIKIGP EDEDVVLWET TSETMIQDYK
301: SVDGIQIAHR GKTQVSLLRL DESLESHSKT TMEESWEIEE VGFNVKGLSS DFFLPPGDLC TKENEESGFN FGDFSSPMMI PLKVSKDSWK LKSSKVTAIE
401: DFQG

Best Arabidopsis Sequence Match ( AT3G55720.1 )
(BLAST)

001: MRTLCPNFDR EDGLETVLEV PMPEELFCSD NNKSGAWRSV KSSLLRSPPD NSSSLATLFG GRDSQIQMLL GIVGAPSIPL PISSDQAKID HPISNLIKNQ
101: SIESAMAKYI VKQYTAAAGG EMALDAVESM YAMGKVKMGV TEFCAAKTLN GKRKKKMVRI RNVNNNNGNG GEMGGFVLWK KGSSQWSLEL VVSGCKVSAG
201: CDGNVDWRQS PWLAHSHASN EPSGPLRRFL QGLDPKTTAN LFAGSVCVGE KAVNNEECFV LKLETQPSGL KSRSKSGMET VKHTVWGCFG QRTGLLVQLE
301: DTYLVRIKTG LEDEDMVLWE TTSETLIQDY KSIDGIQIAH RGKTRVSLLR LDESLESHSK TTMEESWEIE EVGFNVKGLS SDFFLPPGDL CIKEEEETGF
401: SFGDYTSPML LPLKVSTTSW KIKSSKVTAI EDFGEFEG

Arabidopsis Description

Replication factor C subunit, putative (DUF620) [Source:UniProtKB/TrEMBL;Acc:Q9M050]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.