Factsheet for Bra014725.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX76076	Canola	cytosol, nucleus, plastid	91.4	97.28
CDY02955	Canola	cytosol, nucleus, plastid	90.23	96.04
Bra007185.1-P	Field mustard	cytosol, nucleus, plastid	89.77	88.94
AT3G55720.1	Thale cress	nucleus	86.51	84.93
VIT_13s0019g03180.t01	Wine grape	cytosol	53.49	53.99
Solyc03g078650.2.1	Tomato	cytosol, nucleus, plastid	51.86	53.1
PGSC0003DMT400059652	Potato	cytosol	51.63	52.98
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	45.81	51.98
KRH73113	Soybean	cytosol	51.16	51.89
KRH15018	Soybean	cytosol	50.7	51.05
Bra009139.1-P	Field mustard	cytosol	52.33	50.68
KRG97798	Soybean	cytosol	51.63	50.57
KRH31070	Soybean	cytosol	50.93	50.23
Solyc05g052860.2.1	Tomato	cytosol	51.16	49.66
PGSC0003DMT400069765	Potato	cytosol	50.7	49.1
GSMUA_Achr5P28960_001	Banana	cytosol	48.37	47.71
Bra012096.1-P	Field mustard	cytosol	40.0	46.61
GSMUA_Achr6P33890_001	Banana	cytosol	41.4	46.48
PGSC0003DMT400069768	Potato	cytosol	21.63	46.27
TraesCS4B01G211300.1	Wheat	cytosol, nucleus, plastid	47.67	45.96
Bra008179.1-P	Field mustard	cytosol	42.33	45.96
TraesCS4A01G093200.1	Wheat	cytosol, nucleus, plastid	47.21	45.41
TraesCS4D01G211900.1	Wheat	cytosol, nucleus, plastid	47.44	45.33
Bra003768.1-P	Field mustard	cytosol	41.16	44.7
Os03t0267500-01	Rice	plasma membrane	45.58	44.44
Bra023074.1-P	Field mustard	plastid	35.12	44.41
EER95119	Sorghum	cytosol	44.88	43.57
Zm00001d028565_P002	Maize	cytosol	46.05	43.04
Zm00001d047840_P001	Maize	cytosol, peroxisome, plastid	45.35	42.86
HORVU4Hr1G060590.5	Barley	mitochondrion	46.74	40.2
Bra038214.1-P	Field mustard	mitochondrion, plastid	39.53	37.04
Bra022430.1-P	Field mustard	mitochondrion, plastid	40.0	36.67
Bra014219.1-P	Field mustard	plastid	38.6	34.02
Bra005901.1-P	Field mustard	cytosol	26.98	31.52
Bra035117.1-P	Field mustard	mitochondrion	30.47	31.41
Bra010924.1-P	Field mustard	mitochondrion, plastid	37.21	29.96
Bra031821.1-P	Field mustard	cytosol	40.0	22.96

Protein Annotations

EnsemblPlants:Bra014725.1	EnsemblPlants:Bra014725.1-P	EnsemblPlantsGene:Bra014725	InterPro:DUF620	ncoils:Coil	PANTHER:PTHR31300
PANTHER:PTHR31300:SF2	PFAM:PF04788	SEG:seg	UniParc:UPI0002544953	UniProt:M4DE06	MapMan:27.4.5.3

Description

AT3G55720 (E=3e-212) | unknown protein

Coordinates

chrA04:-:2584805..2586551

Molecular Weight (calculated)

47621.0 Da

IEP (calculated)

5.377

GRAVY (calculated)

-0.338

Length

430 amino acids

Sequence
(BLAST)

001: MRTLCPNFDR EDGLETVLEV PMPEELFCSE NNKTGSWRSV KTSFLRSSPD NNSSLSTLFG GHDAQIQMLL GIVGAPLIPL PFSSDHDVLD HPMPKLIKNQ
101: SIEAAMAKYI VKQYTAASGG DLALDRVESM YAMGKVKMGV TEFCAAKPLI GKRKKKMVRI KNLNNGNGGE MGGFVLWKKG SRQWSLELVV SGCKVSAGCD
201: GNVDWKQSPW LAHSNEPSGP LRRFLQGLDP KTTANMFAGS VCVGEKVVND EECFVLKLET QTSGLKSRSK NGMETVKHTV WGCFSQRTGL LVQLEDTYLV
301: RIKIGLDEED VVLWETTSET MIQDYKSVDG IQIAHRGKTQ VSLLRLDESL ESHSKTTMEE SWEIEEVGFN VKGLSSDFFL PPGDLCTKEN EESGFNFGDF
401: SSPMMIPLKV SKDSWKLNSS KVTAIEDFEG

Best Arabidopsis Sequence Match ( AT3G55720.1 )
(BLAST)

001: MRTLCPNFDR EDGLETVLEV PMPEELFCSD NNKSGAWRSV KSSLLRSPPD NSSSLATLFG GRDSQIQMLL GIVGAPSIPL PISSDQAKID HPISNLIKNQ
101: SIESAMAKYI VKQYTAAAGG EMALDAVESM YAMGKVKMGV TEFCAAKTLN GKRKKKMVRI RNVNNNNGNG GEMGGFVLWK KGSSQWSLEL VVSGCKVSAG
201: CDGNVDWRQS PWLAHSHASN EPSGPLRRFL QGLDPKTTAN LFAGSVCVGE KAVNNEECFV LKLETQPSGL KSRSKSGMET VKHTVWGCFG QRTGLLVQLE
301: DTYLVRIKTG LEDEDMVLWE TTSETLIQDY KSIDGIQIAH RGKTRVSLLR LDESLESHSK TTMEESWEIE EVGFNVKGLS SDFFLPPGDL CIKEEEETGF
401: SFGDYTSPML LPLKVSTTSW KIKSSKVTAI EDFGEFEG

Arabidopsis Description

Replication factor C subunit, putative (DUF620) [Source:UniProtKB/TrEMBL;Acc:Q9M050]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.