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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, plastid

Predictor Summary:
  • plastid 5
  • mitochondrion 5
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion, plastid
Any Predictor:mitochondrion, plastid
BaCelLo:plastid
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:mitochondrion
Plant-mPloc:plastid
Predotar:mitochondrion
PProwler:mitochondrion
TargetP:plastid
WoLF PSORT:plastid
YLoc:mitochondrion
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra010128.1-P
Bra029240.1-P
Bra035878.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G19540.1 Bra010128.1-P AT5G62880.1 21798944
AT3G19540.1 Bra029240.1-P AT5G62880.1 21798944
AT3G19540.1 Bra035878.1-P AT5G62880.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY46168 Canola mitochondrion 96.59 99.34
Bra038214.1-P Field mustard mitochondrion, plastid 88.49 90.41
AT3G19540.1 Thale cress plastid 90.41 87.42
KRH35700 Soybean plastid 73.77 74.89
KRG91072 Soybean plastid 73.77 74.73
Solyc01g107350.2.1 Tomato plastid 74.2 74.04
PGSC0003DMT400066530 Potato plastid 74.2 74.04
VIT_03s0091g00410.t01 Wine grape plastid 73.56 72.63
Bra014219.1-P Field mustard plastid 75.05 72.13
GSMUA_Achr4P14230_001 Banana cytosol, mitochondrion, nucleus, peroxisome 68.02 69.65
GSMUA_Achr4P32590_001 Banana cytosol 66.52 69.03
GSMUA_Achr3P02230_001 Banana cytosol, plastid 44.99 68.73
GSMUA_Achr6P16820_001 Banana cytosol 63.75 67.8
OQU79433 Sorghum cytosol 62.69 65.48
TraesCS5B01G078600.2 Wheat cytosol 59.49 64.88
GSMUA_Achr10P... Banana cytosol 53.73 64.78
GSMUA_Achr10P... Banana plastid 57.78 64.68
GSMUA_Achr7P00620_001 Banana mitochondrion 56.08 64.62
HORVU5Hr1G018870.3 Barley cytosol, mitochondrion 63.33 64.57
GSMUA_Achr2P21540_001 Banana plastid 60.13 64.53
TraesCS4D01G076200.1 Wheat cytosol, mitochondrion 62.47 64.11
TraesCS5A01G072300.1 Wheat cytosol 63.11 63.93
Os03t0606100-01 Rice cytosol 59.91 63.86
TraesCS5D01G085100.1 Wheat cytosol 62.9 63.71
TraesCS4A01G237300.1 Wheat cytosol, mitochondrion 62.05 63.68
TraesCS4B01G077800.1 Wheat cytosol 62.05 63.68
GSMUA_Achr6P24020_001 Banana cytosol 54.16 63.34
Os12t0581300-01 Rice cytosol 21.32 63.29
GSMUA_Achr2P13470_001 Banana cytosol 58.42 62.41
GSMUA_Achr7P26350_001 Banana cytosol, mitochondrion, peroxisome, plastid 63.33 61.88
EER91248 Sorghum cytosol 59.91 60.17
Zm00001d030837_P001 Maize cytosol, mitochondrion 61.19 60.04
TraesCS2D01G192800.1 Wheat nucleus 63.97 59.29
TraesCS2B01G211900.1 Wheat nucleus 64.18 59.14
TraesCS2A01G194900.1 Wheat nucleus 63.97 59.06
Zm00001d013746_P001 Maize cytosol 58.21 58.96
Os07t0591100-01 Rice nucleus 65.03 58.88
EER99634 Sorghum nucleus 63.75 57.28
OQU92347 Sorghum mitochondrion, plastid 58.85 56.67
Zm00001d006749_P001 Maize cytosol 62.47 55.7
Zm00001d047324_P001 Maize cytosol 57.57 55.1
HORVU4Hr1G013190.8 Barley mitochondrion 57.57 53.47
Zm00001d016585_P002 Maize extracellular, plasma membrane 28.78 53.36
Zm00001d022006_P001 Maize cytosol, plastid 63.11 53.14
Bra010924.1-P Field mustard mitochondrion, plastid 57.57 50.56
Bra023074.1-P Field mustard plastid 33.9 46.76
Bra035117.1-P Field mustard mitochondrion 40.3 45.32
Bra012096.1-P Field mustard cytosol 35.61 45.26
Bra005901.1-P Field mustard cytosol 34.33 43.75
Bra007185.1-P Field mustard cytosol, nucleus, plastid 37.31 40.32
Bra014725.1-P Field mustard nucleus 36.67 40.0
Bra009139.1-P Field mustard cytosol 37.53 39.64
Bra008179.1-P Field mustard cytosol 32.84 38.89
Bra003768.1-P Field mustard cytosol 32.2 38.13
Bra031821.1-P Field mustard cytosol 35.18 22.03
Protein Annotations
EnsemblPlants:Bra022430.1EnsemblPlants:Bra022430.1-PEnsemblPlantsGene:Bra022430InterPro:DUF620PANTHER:PTHR31300PANTHER:PTHR31300:SF1
PFAM:PF04788SEG:segUniParc:UPI0002547DB8UniProt:M4E0Y3MapMan:27.4.5.3:
Description
AT3G19540 (E=5e-212) | unknown protein
Coordinates
chrA05:-:17738002..17739579
Molecular Weight (calculated)
50489.9 Da
IEP (calculated)
9.319
GRAVY (calculated)
-0.416
Length
469 amino acids
Sequence
(BLAST)
001: MEKKQGFFSA LRGLSPSRSR ARSRSVSPAR SSSPMKALSW GKKNSSGGGY CLSQPELSIG RSGSLRPVME GPDPDEEGGV GGGGEGNVGD SKRLGSGLGH
101: WVKGQLSRAP SVAATAVCRR NDLRLLLGVM GAPLAPIHVS SSDPLPHLSI KNTPIETSSA QYILQQYTAS SGGQKLQSSV KNAYAMGKLK MITSELETAS
201: RTVTNRNPSK AESGGFVLWQ MDPDMWYVEL SVGGNKVRAG CNGKLVWRHT PWLGSHSAKG PVRPLRRGLQ GLDPRTTAAM FAEAKCIGEK NVNGEDCFIL
301: KLCTDPETLK ARSEGPAEII RHVLSGYFSQ KTGLLVHIED SHLTRIQSNG GDTVFWETTY NSSLDDYRQV EGIMIAHSGH SVVTLFRFGE EAMSHTRTKM
401: EESWTIEEVA FNVPGLSLDC FIPPADLKTG SGTEYPQAER GKSNNAVVLS AAHRAKVAAL ENGSFEANR
Best Arabidopsis Sequence Match ( AT3G19540.1 )
(BLAST)
001: MEKKQGFFSA LRHEVVRGLS PSRSRARSRS VSPARSSSPM SALTWGRKNL TGGGGGGGGG GYYLAQPEQL IGRSGSLRPV MEGPDPDEGG GGGNIGESKR
101: LGSGLGHWVK GQLSRAPSVA ATAAYRRNDL RLLLGVMGAP LAPIHVSSSD PLPHLSIKNT PIETSSAQYI LQQYTAASGG QKLQNSIKNA YAMGKLKMIT
201: SELETATRTV RNRNPSKAET GGFVLWQMNP DMWYVELAVG GSKVRAGCNG KLVWRHTPWL GSHTAKGPVR PLRRGLQGLD PRTTAAMFAE AKCIGEKKVN
301: GEDCFILKLC TDPETLKARS EGPAEIIRHV LFGYFSQKTG LLVHIEDSHL TRIQSNGGET VFWETTYNSS LDDYRQVEGI MIAHSGHSVV TLFRFGEVAT
401: SHTRTKMEES WTIEEVAFNV PGLSLDCFIP PADLKTGSLT ESCEYPQEER GKNNTLALSA AHRAKVAALE NGSLEDHRPV WHTDV
Arabidopsis Description
AT3g19540/T31J18_4 [Source:UniProtKB/TrEMBL;Acc:Q9LH41]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.