Factsheet for Bra035117.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 4
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra010128.1-P
Bra029240.1-P
Bra035878.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G79420.1	Bra010128.1-P	AT5G62880.1	21798944
AT1G79420.1	Bra029240.1-P	AT5G62880.1	21798944
AT1G79420.1	Bra035878.1-P	AT5G62880.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX87382	Canola	mitochondrion	99.76	99.76
CDX88540	Canola	mitochondrion	99.52	99.52
AT1G79420.1	Thale cress	mitochondrion	94.72	94.72
CDX79318	Canola	cytosol	18.94	91.86
KRH13789	Soybean	cytosol, mitochondrion, peroxisome, plasma membrane	65.71	71.35
KRH43665	Soybean	mitochondrion, peroxisome, plasma membrane, plastid	65.71	71.17
VIT_19s0085g00900.t01	Wine grape	mitochondrion	64.99	69.85
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	46.52	59.33
GSMUA_Achr9P25120_001	Banana	mitochondrion	44.84	55.49
Bra005901.1-P	Field mustard	cytosol	38.61	43.75
Bra038214.1-P	Field mustard	mitochondrion, plastid	44.84	40.74
Bra022430.1-P	Field mustard	mitochondrion, plastid	45.32	40.3
Bra023074.1-P	Field mustard	plastid	32.85	40.29
Bra012096.1-P	Field mustard	cytosol	33.81	38.21
Bra014219.1-P	Field mustard	plastid	43.17	36.89
Bra003768.1-P	Field mustard	cytosol	33.33	35.1
Bra009139.1-P	Field mustard	cytosol	36.69	34.46
Bra010924.1-P	Field mustard	mitochondrion, plastid	44.12	34.46
Bra008179.1-P	Field mustard	cytosol	32.61	34.34
Bra007185.1-P	Field mustard	cytosol, nucleus, plastid	31.89	30.65
Bra014725.1-P	Field mustard	nucleus	31.41	30.47
Bra031821.1-P	Field mustard	cytosol	33.09	18.42

Protein Annotations

EnsemblPlants:Bra035117.1	EnsemblPlants:Bra035117.1-P	EnsemblPlantsGene:Bra035117	InterPro:DUF620	PANTHER:PTHR31300	PANTHER:PTHR31300:SF8
PFAM:PF04788	SEG:seg	UniParc:UPI0002541D54	UniProt:M4F220	MapMan:27.4.5.3	:

Description

AT1G79420 (E=3e-221) | unknown protein

Coordinates

chrA07:+:22238603..22241599

Molecular Weight (calculated)

45819.5 Da

IEP (calculated)

6.594

GRAVY (calculated)

-0.298

Length

417 amino acids

Sequence
(BLAST)

001: MSNSKSYWRK QRWGTPPQTL TPLMEGPDPD MQDERAKKES SWEAIREWFK VHKGISGNMS SPSVQPHCNS YDVAAKGQDV RLLLGVLGCP LAPISVVGSD
101: LLPDDPLLGS FQIKNVPFET STAHYIIQQY LAATGCLKRA KAAKNMYATG IMKMSCCETE IAAGKSVKTL GGGGNGRSGD SGCFVLWQMH PGMWSLELVL
201: GGTKLISGSD GKTVWRHTPW LGTHAAKGPQ RPLRRLIQGL DPKTTAGLFA KAQCLGERRI GDDDCFVLKV SADRDSLIER NDAGAPAEVI RHALYGYFCQ
301: KSGLLIYLED SHLTRVTTIS PEDEAVYWET TIGSSIGDYR DVDGVAVAHC GRAVATVFRF GETSLQYSRT RMEEIWRIDD VVFDVPGLSL DSFFPPADIF
401: EDDNNISTPV YSNVNSR

Best Arabidopsis Sequence Match ( AT1G79420.1 )
(BLAST)

001: MSNSKSYWRK QRWGTPPQAL TPLMEGPDPD MQDERTKKES SWEAIREWFK VHKGISGNMS SPSVQPLCNS YDVPAKGQDL RLLLGVLGCP LAPISVVVSD
101: LFPDDPLLGS FQIKNVPFET STAHYIIQQY LAATGCLKRA KAAKNMYATG IMKMSCCETE IAAGKSVKTL GGGGNGRSGD SGCFVLWQMQ PGMWSLELVL
201: GGTKLISGSD GKTVWRHTPW LGTHAAKGPQ RPLRRLIQGL DPKTTASLFA KAQCLGERRI GDDDCFVLKV SADRDSLLER NDAGAPAEVI RHALYGYFCQ
301: KSGLLVYLED SHLTRVMTIS PEDEAVYWET TIGTSIGDYR DVDGVAVAHC GRAVATVFRF GETSLQYSRT RMEEIWRIDD VVFDVPGLSL DSFIPPADIF
401: EDTNPNNNNI YSIVNSR

Arabidopsis Description

At1g79420/T8K14_16 [Source:UniProtKB/TrEMBL;Acc:Q940T0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.