CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome, plastid, plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 1
plastid 2
mitochondrion 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH03338
KRH54429
KRH54430
KRH57035
KRH63489

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G79420.1	KRH03338	AT5G62880.1	21798944
AT1G79420.1	KRH54429	AT5G62880.1	21798944
AT1G79420.1	KRH54430	AT5G62880.1	21798944
AT1G79420.1	KRH57035	AT5G62880.1	21798944
AT1G79420.1	KRH63489	AT5G62880.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH13789	Soybean	cytosol, mitochondrion, peroxisome, plasma membrane	97.92	98.18
VIT_19s0085g00900.t01	Wine grape	mitochondrion	80.0	79.38
AT1G79420.1	Thale cress	mitochondrion	71.95	66.43
CDX79318	Canola	cytosol	14.81	66.28
CDX87382	Canola	mitochondrion	71.43	65.95
CDX88540	Canola	mitochondrion	71.43	65.95
Bra035117.1-P	Field mustard	mitochondrion	71.17	65.71
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	51.95	61.16
GSMUA_Achr9P25120_001	Banana	mitochondrion	50.91	58.16
KRH71794	Soybean	cytosol	44.42	47.24
KRG96347	Soybean	cytosol	42.6	46.46
KRH68081	Soybean	cytosol	42.86	46.22
KRH38019	Soybean	peroxisome	42.86	45.71
KRH35700	Soybean	plastid	51.95	43.29
KRG91072	Soybean	plastid	51.95	43.2
KRH15430	Soybean	plastid	50.39	41.01
KRH05611	Soybean	plastid	50.39	40.76
KRH51867	Soybean	cytosol	36.62	36.91
KRH50361	Soybean	cytosol	36.36	36.65
KRH05801	Soybean	cytosol	36.1	36.1
KRH76791	Soybean	cytosol	34.81	35.83
KRH73113	Soybean	cytosol	39.22	35.61
KRH15018	Soybean	cytosol	39.48	35.6
KRH31070	Soybean	cytosol	40.26	35.55
KRH28651	Soybean	cytosol	34.81	35.45
KRG97798	Soybean	cytosol	40.26	35.31

Protein Annotations

EMBL:ACUP02004878	EnsemblPlants:KRH43665	EnsemblPlantsGene:GLYMA_08G163400	EntrezGene:100791744	InterPro:DUF620	PANTHER:PTHR31300
PANTHER:PTHR31300:SF8	PFAM:PF04788	ProteinID:KRH43665	ProteinID:KRH43665.1	SEG:seg	UniParc:UPI00023C61A1
UniProt:I1KTV9	MapMan:27.4.5.3	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:12830250..12833813

Molecular Weight (calculated)

42930.3 Da

IEP (calculated)

7.283

GRAVY (calculated)

-0.307

Length

385 amino acids

Sequence
(BLAST)

001: MGSRARWRQS WAPQPLTPLM EGPGPEMQEE GTKKESSWEV IREWFRTQKI SPSGSFSQSS SSFYGTIHAK TQDLRLLLGV LGCPLAPIPS AHDPTLSIHI
101: KDTPFETSTA KYIIQQYLAA TGCLKQQKDT KNMYATGMVK MICCETEISS GKNVKCLGTR SSENGCFVLW QMQPGMWSLE LVVGDHKVVA GSNGKTVWRH
201: TPWLGTHAAK GPQRPLRRLI QGLDPKTTAS LFTNAQCLGE NRIGTVDCFV LKVSADRAAV VERSEGPAEV IRHILYGYFC QKSGLLIYLE DSHLTRVPTQ
301: DNDTVYWETT IGSSIGDYRD VDGILIAHQG RSVATVFRFG ELSMQHSRTR MEEIWTIDDV MFNVPGLSMD HFIPPADIFD NINSP

Best Arabidopsis Sequence Match ( AT1G79420.1 )
(BLAST)

001: MSNSKSYWRK QRWGTPPQAL TPLMEGPDPD MQDERTKKES SWEAIREWFK VHKGISGNMS SPSVQPLCNS YDVPAKGQDL RLLLGVLGCP LAPISVVVSD
101: LFPDDPLLGS FQIKNVPFET STAHYIIQQY LAATGCLKRA KAAKNMYATG IMKMSCCETE IAAGKSVKTL GGGGNGRSGD SGCFVLWQMQ PGMWSLELVL
201: GGTKLISGSD GKTVWRHTPW LGTHAAKGPQ RPLRRLIQGL DPKTTASLFA KAQCLGERRI GDDDCFVLKV SADRDSLLER NDAGAPAEVI RHALYGYFCQ
301: KSGLLVYLED SHLTRVMTIS PEDEAVYWET TIGTSIGDYR DVDGVAVAHC GRAVATVFRF GETSLQYSRT RMEEIWRIDD VVFDVPGLSL DSFIPPADIF
401: EDTNPNNNNI YSIVNSR

Arabidopsis Description

At1g79420/T8K14_16 [Source:UniProtKB/TrEMBL;Acc:Q940T0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.