CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
mitochondrion 2
cytosol 4
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH00374
KRH03376
KRH13046
KRH24128
KRH28440
KRH29101
KRH40820
KRH43411
KRH52586
KRH54462
KRH57009
KRH61926
KRH63457
KRH65511
KRH76068
KRH77032

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G48040.1	KRH52586	AT1G22920.1	21798944
AT3G48040.1	KRH61926	AT1G22920.1	21798944
AT3G48040.1	KRH03376	AT3G48100.1	18642946
AT3G48040.1	KRH54462	AT3G48100.1	18642946
AT3G48040.1	KRH57009	AT3G48100.1	18642946
AT3G48040.1	KRH63457	AT3G48100.1	18642946
AT5G62880.1	KRH52586	AT1G22920.1	21798944
AT5G62880.1	KRH61926	AT1G22920.1	21798944
AT5G62880.1	KRH00374	AT2G38440.1	17267444
AT5G62880.1	KRH40820	AT2G38440.1	17267444
AT5G62880.1	KRH65511	AT2G38440.1	17267444
AT5G62880.1	KRH76068	AT2G38440.1	17267444
AT5G62880.1	KRH13046	AT4G16340.1	17267444
AT5G62880.1	KRH43411	AT4G16340.1	17267444
AT5G62880.1	KRH28440	AT4G36910.1	21798944
AT5G62880.1	KRH77032	AT4G36910.1	21798944
AT5G62880.1	KRH24128	AT4G38430.1	22500990
AT5G62880.1	KRH29101	AT4G38430.1	22500990

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH54429	Soybean	cytosol	28.71	92.31
KRH63489	Soybean	cytosol	90.43	89.15
Solyc03g114070.2.1	Tomato	cytosol	88.52	88.1
PGSC0003DMT400063229	Potato	cytosol	88.52	88.1
VIT_17s0000g07890.t01	Wine grape	cytosol	86.6	86.19
KRH54430	Soybean	cytosol	59.81	85.62
Bra035878.1-P	Field mustard	cytosol	82.78	84.39
Bra010128.1-P	Field mustard	cytosol	83.73	84.13
AT3G48040.1	Thale cress	cytosol	83.73	84.13
TraesCS6D01G288300.1	Wheat	cytosol	85.65	84.04
AT5G62880.1	Thale cress	cytosol	86.12	83.72
TraesCS6A01G309000.2	Wheat	cytosol	85.17	83.57
CDY00332	Canola	cytosol	85.65	83.26
EES05544	Sorghum	cytosol	85.17	83.18
Os06t0234200-03	Rice	cytosol	85.17	82.79
CDY56740	Canola	cytosol	85.17	82.41
Bra029240.1-P	Field mustard	cytosol	84.69	82.33
CDY30738	Canola	cytosol	84.69	82.33
EER88130	Sorghum	cytosol	84.69	82.33
Os02t0742200-01	Rice	cytosol	84.21	82.24
CDY45748	Canola	cytosol	83.73	82.16
TraesCS7D01G192400.1	Wheat	cytosol	82.78	81.22
TraesCS7B01G096200.1	Wheat	cytosol	82.78	81.22
TraesCS7A01G191400.1	Wheat	cytosol	82.78	81.22
HORVU6Hr1G076210.5	Barley	cytosol	83.25	80.93
TraesCS6B01G338000.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	82.3	80.75
CDY68200	Canola	cytosol	69.86	80.66
KRH03338	Soybean	cytosol, plastid	97.61	80.31
KRH24310	Soybean	cytosol	74.16	78.68
KRH29287	Soybean	cytosol	74.16	78.68
KRH51687	Soybean	cytosol, nucleus, plastid	73.68	78.17
PGSC0003DMT400063227	Potato	cytosol	59.81	78.12
KRH61024	Soybean	cytosol	73.21	78.06
KRH61026	Soybean	cytosol, nucleus, plastid	73.21	77.67
KRH27004	Soybean	cytosol, nucleus, plastid	72.25	77.04
KRH28825	Soybean	cytosol	71.77	76.14
KRH76629	Soybean	cytosol	71.77	76.14
KRH08028	Soybean	cytosol	71.29	75.63
KRH69754	Soybean	cytosol	70.81	75.13
KRH25686	Soybean	cytosol	70.81	75.13
KRH22321	Soybean	cytosol, nucleus, plasma membrane	70.81	73.63
KRH50139	Soybean	cytosol, nucleus, plastid	68.42	72.96
KRH48356	Soybean	cytosol	73.21	72.86
KRH39320	Soybean	cytosol	73.21	72.17
HORVU7Hr1G038980.5	Barley	cytosol	82.78	69.2
Zm00001d052273_P004	Maize	plastid	70.81	68.2
KRH20356	Soybean	cytosol	68.9	67.61
GSMUA_Achr6P36120_001	Banana	cytosol	84.21	63.31
Zm00001d044802_P001	Maize	cytosol	83.25	60.63
KRH55628	Soybean	cytosol	21.05	60.27
KRG90165	Soybean	cytosol	30.62	53.33
Zm00001d018004_P002	Maize	cytosol, peroxisome, plastid	82.78	34.19

Protein Annotations

MapMan:27.4.1	Gene3D:3.40.50.300	UniProt:A0A0R4J399	EMBL:ACUP02002807	EnsemblPlantsGene:GLYMA_05G035200	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0007154	GO:GO:0007165	GO:GO:0007264	GO:GO:0008150
GO:GO:0009987	GO:GO:0016020	GO:GO:0016787	InterPro:IPR003578	EnsemblPlants:KRH57035	ProteinID:KRH57035
ProteinID:KRH57035.1	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51420	PANTHER:PTHR24072
PANTHER:PTHR24072:SF149	SMART:SM00173	SMART:SM00174	SMART:SM00175	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom
InterPro:Small_GTPase	InterPro:Small_GTPase_Rho	TIGRFAMs:TIGR00231	UniParc:UPI00019A9EAA	SEG:seg	:

Description

hypothetical protein

Coordinates

chr5:-:3105274..3109395

Molecular Weight (calculated)

23226.2 Da

IEP (calculated)

9.178

GRAVY (calculated)

-0.097

Length

209 amino acids

Sequence
(BLAST)

001: MAATASRFIK CVTVGDGAVG KTCMLICYTS NKFPTDYIPT VFDNFSANVV VEGTTVNLGL WDTAGQEDYN RLRPLSYRGA DVFVLAFSLV SHASYENVLK
101: KWVPELQHFA PGIPVVLVGT KLDLREDKHY LADHPGLVPV TSEQGEELRK LVGATYYIEC SSKTQQNVKS VFDAAIKVVI KPPQKQEKKK PRRGCLLNVI
201: CGRNIVRFK

Best Arabidopsis Sequence Match ( AT5G62880.1 )
(BLAST)

001: MASSASKFIK CVTVGDGAVG KTCMLICYTS NKFPTDYIPT VFDNFSANVV VEGTTVNLGL WDTAGQEDYN RLRPLSYRGA DVFVLSFSLV SRASYENVFK
101: KWIPELQHFA PGVPLVLVGT KLDLREDKHY LADHPGLSPV TTAQGEELRK LIGATYYIEC SSKTQQNVKA VFDSAIKEVI KPLVKQKEKT KKKKKQKSNH
201: GCLSNVLCGR IVTRH

Arabidopsis Description

ARAC10ROP11 [Source:UniProtKB/TrEMBL;Acc:A0A178UC00]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.