CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus, plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG97079
KRH01997
KRH11529
KRH13046
KRH36543
KRH43411
KRH51157
KRH68821

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G20090.1	KRH13046	AT4G16340.1	17267444
AT1G20090.1	KRH43411	AT4G16340.1	17267444
AT1G20090.1	KRG97079	AT5G18410.1	15294869
AT1G20090.1	KRH68821	AT5G18410.1	15294869
AT1G75840.1	KRH01997	AT3G07880.1	10798620
AT1G75840.1	KRH11529	AT3G07880.1	10798620
AT1G75840.1	KRH36543	AT3G07880.1	10798620
AT1G75840.1	KRH51157	AT3G07880.1	10798620

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH61026	Soybean	cytosol, nucleus, plastid	97.45	96.95
KRH51687	Soybean	cytosol, nucleus, plastid	96.94	96.45
KRH24310	Soybean	cytosol	95.41	94.92
KRH29287	Soybean	cytosol	95.41	94.92
VIT_18s0001g14670.t01	Wine grape	cytosol	94.9	94.42
KRH76629	Soybean	cytosol	92.86	92.39
KRH28825	Soybean	cytosol	92.86	92.39
KRH08028	Soybean	cytosol	91.84	91.37
Bra008227.1-P	Field mustard	cytosol	91.33	91.33
CDY13528	Canola	cytosol	91.33	91.33
CDY39066	Canola	cytosol	91.33	91.33
CDX68116	Canola	cytosol	90.82	91.28
CDX85925	Canola	cytosol	90.82	91.28
Bra003739.1-P	Field mustard	cytosol	90.82	91.28
KRH69754	Soybean	cytosol	91.33	90.86
CDY54338	Canola	cytosol	91.33	90.86
AT1G75840.1	Thale cress	cytosol	90.82	90.82
Bra016477.1-P	Field mustard	cytosol	90.82	90.82
CDY62937	Canola	cytosol	90.82	90.82
EES06186	Sorghum	cytosol	90.82	90.36
Zm00001d015036_P005	Maize	cytosol	90.82	90.36
Os02t0120800-01	Rice	plasma membrane	90.82	90.36
Bra015807.1-P	Field mustard	cytosol	90.31	90.31
CDX73206	Canola	cytosol	90.31	90.31
CDX87656	Canola	cytosol	90.31	90.31
AT1G20090.1	Thale cress	cytosol	89.8	90.26
CDY43414	Canola	cytosol	90.31	89.85
TraesCS6D01G068500.2	Wheat	cytosol	90.31	89.85
TraesCS6B01G094700.2	Wheat	cytosol	90.31	89.85
TraesCS6A01G070700.2	Wheat	cytosol	90.31	89.85
Bra012210.1-P	Field mustard	cytosol	89.8	89.34
CDY57592	Canola	cytosol	89.29	85.78
KRH27004	Soybean	cytosol, nucleus, plastid	85.2	85.2
KRH25686	Soybean	cytosol	84.69	84.26
KRH50139	Soybean	cytosol, nucleus, plastid	84.18	84.18
KRH22321	Soybean	cytosol, nucleus, plasma membrane	83.67	81.59
KRH54429	Soybean	cytosol	27.04	81.54
KRH20356	Soybean	cytosol	83.16	76.53
HORVU2Hr1G076740.1	Barley	cytosol	23.98	73.44
Zm00001d053899_P001	Maize	cytosol	86.73	73.28
KRH57035	Soybean	cytosol	78.06	73.21
KRH55628	Soybean	cytosol	27.04	72.6
KRH48356	Soybean	cytosol	77.04	71.9
KRH63489	Soybean	cytosol	77.55	71.7
KRH39320	Soybean	cytosol	77.04	71.23
KRH54430	Soybean	cytosol	50.0	67.12
KRH03338	Soybean	cytosol, plastid	78.06	60.24
KRG90165	Soybean	cytosol	34.18	55.83

Protein Annotations

EntrezGene:100499696	MapMan:27.4.1	Gene3D:3.40.50.300	EMBL:ACUP02002147	EMBL:BT089198	UniProt:C6SVK5
EnsemblPlantsGene:GLYMA_04G023300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0007154	GO:GO:0007165
GO:GO:0007264	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016787	InterPro:IPR003578
EnsemblPlants:KRH61024	ProteinID:KRH61024	ProteinID:KRH61024.1	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449
PFscan:PS51420	PANTHER:PTHR24072	PANTHER:PTHR24072:SF249	SMART:SM00173	SMART:SM00174	SMART:SM00175
SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	InterPro:Small_GTPase_Rho	TIGRFAMs:TIGR00231	UniParc:UPI00004E2A12
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:1835931..1839283

Molecular Weight (calculated)

21575.2 Da

IEP (calculated)

9.546

GRAVY (calculated)

-0.044

Length

196 amino acids

Sequence
(BLAST)

001: MSASRFIKCV TVGDGAVGKT CLLISYTSNT FPTDYVPTVF DNFSANVVVD GSTVNLGLWD TAGQEDYNRL RPLSYRGADV FILAFSLISK ASYENIAKKW
101: IPELRHYAPG VPIILVGTKL DLRDDKQFFM DHPGAVPITT AQGEELRKLI GAPAYIECSS KTQQNVKAVF DAAIKVVIQP PKLKKKRKTQ KACSIL

Best Arabidopsis Sequence Match ( AT4G35020.3 )
(BLAST)

001: MSASRFIKCV TVGDGAVGKT CLLISYTSNT FPTDYVPTVF DNFSANVIVD GNTINLGLWD TAGQEDYNRL RPLSYRGADV FLLAFSLVSK ASYENVSKKW
101: VPELRHYAPG VPIILVGTKL DLRDDKQFFA EHPGAVPIST AQGEELKKLI GAPAYIECSA KTQQNVKAVF DAAIKVVLQP PKNKKKKKRK SQKGCSIL

Arabidopsis Description

ARAC3At4g35020 [Source:UniProtKB/TrEMBL;Acc:Q5PNX9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.