CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH51687
KRH61024
KRH61026

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G07880.1	KRH51687	AT1G75840.1	10798620
AT3G07880.1	KRH61024	AT1G75840.1	10798620
AT3G07880.1	KRH61026	AT1G75840.1	10798620

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH36543	Soybean	cytosol	86.67	89.11
KRH01997	Soybean	cytosol	71.76	73.49
KRH14075	Soybean	cytosol	64.71	72.69
KRH51157	Soybean	cytosol	70.59	72.29
VIT_00s0187g00210.t01	Wine grape	cytosol	64.71	71.12
KRH74038	Soybean	cytosol	64.31	70.39
Solyc04g014760.2.1	Tomato	nucleus	66.67	69.96
PGSC0003DMT400060556	Potato	cytosol	65.88	69.14
Bra001274.1-P	Field mustard	cytosol	56.47	67.92
PGSC0003DMT400021800	Potato	cytosol	61.57	67.38
Solyc05g054110.2.1	Tomato	cytosol	61.18	66.95
AT3G07880.1	Thale cress	cytosol	61.18	65.0
Bra040037.1-P	Field mustard	cytosol	57.65	64.76
Solyc11g012270.1.1	Tomato	cytosol	65.49	64.23
Bra029684.1-P	Field mustard	cytosol	62.35	64.11
CDY35970	Canola	cytosol	62.35	64.11
PGSC0003DMT400034743	Potato	cytosol	64.31	63.08
CDY28012	Canola	cytosol	60.78	62.75
GSMUA_Achr9P12630_001	Banana	cytosol	55.29	59.24
Zm00001d051687_P001	Maize	cytosol	53.33	58.62
GSMUA_Achr7P20430_001	Banana	cytosol	59.22	57.63
Zm00001d017859_P002	Maize	cytosol	55.29	57.09
GSMUA_Achr5P04110_001	Banana	cytosol	57.25	55.3
TraesCS6B01G310800.1	Wheat	cytosol	55.29	54.86
TraesCS6A01G282400.1	Wheat	cytosol	55.29	54.02
TraesCS6D01G262900.1	Wheat	cytosol	54.51	53.26
OQU85511	Sorghum	mitochondrion	43.14	51.64
KRH58804	Soybean	cytosol	46.67	50.42
KRG97381	Soybean	cytosol	48.24	50.2
KRH31533	Soybean	cytosol	47.45	49.79
Os06t0318300-02	Rice	cytosol	52.16	49.26
KRH42697	Soybean	cytosol	45.88	49.16
KXG19891	Sorghum	cytosol	52.55	47.35
KRG95708	Soybean	cytosol	38.43	42.06
Os02t0719000-01	Rice	cytosol	57.65	38.99
KRH19602	Soybean	cytosol	36.47	38.91
KRH32228	Soybean	cytosol	36.47	35.23

Protein Annotations

EntrezGene:100813326	Gene3D:2.70.50.30	MapMan:27.4.4	EMBL:ACUP02009215	EnsemblPlantsGene:GLYMA_15G114800	GO:GO:0003674
GO:GO:0005094	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150
GO:GO:0030234	GO:GO:0050790	InterPro:IPR024792	InterPro:Ig_E-set	UniProt:K7MAU4	EnsemblPlants:KRH11529
ProteinID:KRH11529	ProteinID:KRH11529.1	PFAM:PF02115	PRINTS:PR00492	PANTHER:PTHR10980	PANTHER:PTHR10980:SF30
InterPro:RhoGDI_dom_sf	InterPro:Rho_GDI	SUPFAM:SSF81296	UniParc:UPI000233B5BF	SEG:seg	:

Description

hypothetical protein

Coordinates

chr15:-:9028187..9030144

Molecular Weight (calculated)

28369.7 Da

IEP (calculated)

4.327

GRAVY (calculated)

-0.850

Length

255 amino acids

Sequence
(BLAST)

001: MSLGIAKDMG FDDKLKDNEG AGDDDASRVH AGKAGTDHEE SEDEGGGGGG GGGTLSRYRS ESSIAATEDE DDDDEERKIE LGPQYTLKEQ LEKDKDDESL
101: RRWKEQLLGS VDINSVGETL EPNVKILSLA IKSADRPDIV LAIPEGGNPK GLWFTLKEGS RYRLMFTFQV ENNIVSGLKY TNTVWKTGIK VDSSKEMIGT
201: FSPQAEPYTH EMPEETTPSG MFARGQYSAR SKFVDDDNKC YLEINYTFDI RKEWQ

Best Arabidopsis Sequence Match ( AT3G07880.1 )
(BLAST)

001: MSLVSGARDM GFDDNNNNKN NKDGDDENSS SRTRADDDAL SRQMSESSLC ATEEEEDDDS KLQLGPQYTI KEHLEKDKDD ESLRKWKEQL LGSVDVTNIG
101: ETLDPEVRID SLAIISPGRP DIVLLVPENG NPKGMWFTLK EGSKYNLKFT FHVNNNIVSG LRYTNTVWKT GVKVDRAKEM LGTFSPQLEP YNHVMPEETT
201: PSGMFARGSY SARTKFLDDD NKCYLEINYS FDIRKEWPAL

Arabidopsis Description

GDI1Putative RHO GDP-dissociation inhibitor 1 [Source:UniProtKB/TrEMBL;Acc:Q541X0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.