Factsheet for PGSC0003DMT400034743

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g012270.1.1	Tomato	cytosol	95.0	95.0
PGSC0003DMT400060556	Potato	cytosol	77.31	82.72
PGSC0003DMT400021800	Potato	cytosol	65.38	72.96
Bra001274.1-P	Field mustard	cytosol	53.85	66.04
KRH51157	Soybean	cytosol	61.92	64.66
KRH11529	Soybean	nucleus	63.08	64.31
VIT_00s0187g00210.t01	Wine grape	cytosol	56.92	63.79
Bra040037.1-P	Field mustard	cytosol	55.38	63.44
KRH36543	Soybean	cytosol	60.38	63.31
KRH01997	Soybean	cytosol	60.0	62.65
AT3G07880.1	Thale cress	cytosol	57.31	62.08
CDY35970	Canola	cytosol	56.54	59.27
Bra029684.1-P	Field mustard	cytosol	56.54	59.27
CDY28012	Canola	cytosol	56.15	59.11
GSMUA_Achr9P12630_001	Banana	cytosol	53.08	57.98
GSMUA_Achr7P20430_001	Banana	cytosol	56.92	56.49
Zm00001d051687_P001	Maize	cytosol	48.46	54.31
Zm00001d017859_P002	Maize	cytosol	50.38	53.04
TraesCS6D01G262900.1	Wheat	cytosol	52.69	52.49
GSMUA_Achr5P04110_001	Banana	cytosol	52.69	51.89
TraesCS6B01G310800.1	Wheat	cytosol	50.0	50.58
TraesCS6A01G282400.1	Wheat	cytosol	50.38	50.19
Os06t0318300-02	Rice	cytosol	50.38	48.52
OQU85511	Sorghum	mitochondrion	39.23	47.89
KXG19891	Sorghum	cytosol	51.15	47.0
PGSC0003DMT400011652	Potato	cytosol	31.54	42.27
Os02t0719000-01	Rice	cytosol	54.62	37.67

Protein Annotations

EntrezGene:102596240	Gene3D:2.70.50.30	MapMan:27.4.4	GO:GO:0003674	GO:GO:0005094	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0030234	GO:GO:0050790
InterPro:IPR024792	InterPro:Ig_E-set	UniProt:M1B176	PFAM:PF02115	EnsemblPlantsGene:PGSC0003DMG400013348	PGSC:PGSC0003DMG400013348
EnsemblPlants:PGSC0003DMT400034743	PRINTS:PR00492	PANTHER:PTHR10980	PANTHER:PTHR10980:SF30	InterPro:RhoGDI_dom_sf	InterPro:Rho_GDI
SUPFAM:SSF81296	UniParc:UPI000295F15B	RefSeq:XP_006352356.1	:	:	:

Description

Pollen tube RhoGDI2 [Source:PGSC_GENE;Acc:PGSC0003DMG400013348]

Coordinates

chr11:+:546432..549562

Molecular Weight (calculated)

29235.0 Da

IEP (calculated)

4.490

GRAVY (calculated)

-0.761

Length

260 amino acids

Sequence
(BLAST)

001: MSLAVRFAEN SKNMGFDDNK VEGKEGSATI SEGNKGIVAD FDPEIENDGG PVEGNRVNRQ MSESSIYTTD HEEDDDEANN KIELGPQCTL KETFEKDKDD
101: ESLRRWKEQL LGSVDINAVG ESLDPEVKIL SLAIKSPGRS DIVLPIPADG NPKSPWFVLK EGSKYSLKFT FQINNNIVTG LKYKNAVWKT GIKVDSTKQM
201: IGAFSPQLEP YTHEMPEETT PSGIFARGSY SARTKFLDDD NKCYLEINYT FEIKREWQEK

Best Arabidopsis Sequence Match ( AT3G07880.1 )
(BLAST)

001: MSLVSGARDM GFDDNNNNKN NKDGDDENSS SRTRADDDAL SRQMSESSLC ATEEEEDDDS KLQLGPQYTI KEHLEKDKDD ESLRKWKEQL LGSVDVTNIG
101: ETLDPEVRID SLAIISPGRP DIVLLVPENG NPKGMWFTLK EGSKYNLKFT FHVNNNIVSG LRYTNTVWKT GVKVDRAKEM LGTFSPQLEP YNHVMPEETT
201: PSGMFARGSY SARTKFLDDD NKCYLEINYS FDIRKEWPAL

Arabidopsis Description

GDI1Putative RHO GDP-dissociation inhibitor 1 [Source:UniProtKB/TrEMBL;Acc:Q541X0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.