Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G07880.1 | KRH51687 | AT1G75840.1 | 10798620 |
| AT3G07880.1 | KRH61024 | AT1G75840.1 | 10798620 |
| AT3G07880.1 | KRH61026 | AT1G75840.1 | 10798620 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH51157 | Soybean | cytosol | 83.53 | 83.53 |
| KRH11529 | Soybean | nucleus | 73.49 | 71.76 |
| KRH36543 | Soybean | cytosol | 69.48 | 69.76 |
| KRH14075 | Soybean | cytosol | 63.05 | 69.16 |
| VIT_00s0187g00210.t01 | Wine grape | cytosol | 63.45 | 68.1 |
| Solyc04g014760.2.1 | Tomato | nucleus | 65.86 | 67.49 |
| PGSC0003DMT400021800 | Potato | cytosol | 63.05 | 67.38 |
| Solyc05g054110.2.1 | Tomato | cytosol | 62.65 | 66.95 |
| KRH74038 | Soybean | cytosol | 62.25 | 66.52 |
| PGSC0003DMT400060556 | Potato | cytosol | 64.26 | 65.84 |
| Bra001274.1-P | Field mustard | cytosol | 55.02 | 64.62 |
| Bra040037.1-P | Field mustard | cytosol | 56.63 | 62.11 |
| AT3G07880.1 | Thale cress | cytosol | 59.84 | 62.08 |
| Solyc11g012270.1.1 | Tomato | cytosol | 63.86 | 61.15 |
| Bra029684.1-P | Field mustard | cytosol | 60.64 | 60.89 |
| CDY35970 | Canola | cytosol | 60.64 | 60.89 |
| CDY28012 | Canola | cytosol | 60.24 | 60.73 |
| PGSC0003DMT400034743 | Potato | cytosol | 62.65 | 60.0 |
| GSMUA_Achr9P12630_001 | Banana | cytosol | 55.82 | 58.4 |
| Zm00001d051687_P001 | Maize | cytosol | 53.01 | 56.9 |
| Zm00001d017859_P002 | Maize | cytosol | 55.42 | 55.87 |
| GSMUA_Achr5P04110_001 | Banana | cytosol | 58.23 | 54.92 |
| GSMUA_Achr7P20430_001 | Banana | cytosol | 57.43 | 54.58 |
| TraesCS6B01G310800.1 | Wheat | cytosol | 54.62 | 52.92 |
| TraesCS6D01G262900.1 | Wheat | cytosol | 54.62 | 52.11 |
| KRH58804 | Soybean | cytosol | 48.59 | 51.27 |
| KRH42697 | Soybean | cytosol | 49.0 | 51.26 |
| TraesCS6A01G282400.1 | Wheat | cytosol | 53.01 | 50.57 |
| OQU85511 | Sorghum | mitochondrion | 41.77 | 48.83 |
| Os06t0318300-02 | Rice | cytosol | 52.61 | 48.52 |
| KRG97381 | Soybean | cytosol | 46.59 | 47.35 |
| KRH31533 | Soybean | cytosol | 45.38 | 46.5 |
| KXG19891 | Sorghum | cytosol | 52.21 | 45.94 |
| KRG95708 | Soybean | cytosol | 40.16 | 42.92 |
| KRH19602 | Soybean | cytosol | 36.14 | 37.66 |
| KRH32228 | Soybean | cytosol | 39.36 | 37.12 |
| Os02t0719000-01 | Rice | cytosol | 55.42 | 36.6 |
Protein Annotations
| EntrezGene:100802701 | Gene3D:2.70.50.30 | MapMan:27.4.4 | EMBL:ACUP02010293 | EnsemblPlantsGene:GLYMA_17G008800 | GO:GO:0003674 |
| GO:GO:0005094 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0008150 |
| GO:GO:0030234 | GO:GO:0050790 | UniProt:I1MR10 | InterPro:IPR024792 | InterPro:Ig_E-set | EnsemblPlants:KRH01997 |
| ProteinID:KRH01997 | ProteinID:KRH01997.1 | PFAM:PF02115 | PRINTS:PR00492 | PANTHER:PTHR10980 | PANTHER:PTHR10980:SF30 |
| InterPro:RhoGDI_dom_sf | InterPro:Rho_GDI | SUPFAM:SSF81296 | UniParc:UPI000233EDCC | SEG:seg | : |
Description
hypothetical protein
Coordinates
chr17:+:725683..728962
Molecular Weight (calculated)
27979.7 Da
IEP (calculated)
4.628
GRAVY (calculated)
-0.683
Length
249 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLAIGVVSN CKSNMGFDDN KGKEVPEMQH SGKTVHVHED ESGDERGTSL SRHMSEGSIA ATEDEDEDVE RRIDLGPQCT LKEQLEKDKD DESLRRWKEQ
101: LLGSVDMTSV GESLEPEVKI LSLAIKAAGR EDIVLPIPES GNPSGLWFTL KEGSRYSLMF TFQVSHNIVS GLKYTNTVWK TGLKVDSTKE MIGTFSPQAE
201: PYTHEMPEET TPSGLLARGQ YSARSKFVDD DNKLYLEINY TFDIRKEWH
101: LLGSVDMTSV GESLEPEVKI LSLAIKAAGR EDIVLPIPES GNPSGLWFTL KEGSRYSLMF TFQVSHNIVS GLKYTNTVWK TGLKVDSTKE MIGTFSPQAE
201: PYTHEMPEET TPSGLLARGQ YSARSKFVDD DNKLYLEINY TFDIRKEWH
001: MSLVSGARDM GFDDNNNNKN NKDGDDENSS SRTRADDDAL SRQMSESSLC ATEEEEDDDS KLQLGPQYTI KEHLEKDKDD ESLRKWKEQL LGSVDVTNIG
101: ETLDPEVRID SLAIISPGRP DIVLLVPENG NPKGMWFTLK EGSKYNLKFT FHVNNNIVSG LRYTNTVWKT GVKVDRAKEM LGTFSPQLEP YNHVMPEETT
201: PSGMFARGSY SARTKFLDDD NKCYLEINYS FDIRKEWPAL
101: ETLDPEVRID SLAIISPGRP DIVLLVPENG NPKGMWFTLK EGSKYNLKFT FHVNNNIVSG LRYTNTVWKT GVKVDRAKEM LGTFSPQLEP YNHVMPEETT
201: PSGMFARGSY SARTKFLDDD NKCYLEINYS FDIRKEWPAL
Arabidopsis Description
GDI1Putative RHO GDP-dissociation inhibitor 1 [Source:UniProtKB/TrEMBL;Acc:Q541X0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.