Factsheet for PGSC0003DMT400060556

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g014760.2.1	Tomato	nucleus	92.18	92.18
PGSC0003DMT400034743	Potato	cytosol	82.72	77.31
PGSC0003DMT400021800	Potato	cytosol	73.66	76.82
Bra001274.1-P	Field mustard	cytosol	58.44	66.98
KRH36543	Soybean	cytosol	67.49	66.13
KRH11529	Soybean	nucleus	69.14	65.88
VIT_00s0187g00210.t01	Wine grape	cytosol	62.55	65.52
Bra040037.1-P	Field mustard	cytosol	60.49	64.76
KRH01997	Soybean	cytosol	65.84	64.26
AT3G07880.1	Thale cress	cytosol	63.37	64.17
KRH51157	Soybean	cytosol	64.61	63.05
CDY28012	Canola	cytosol	62.14	61.13
CDY35970	Canola	cytosol	61.73	60.48
Bra029684.1-P	Field mustard	cytosol	61.73	60.48
GSMUA_Achr9P12630_001	Banana	cytosol	57.2	58.4
GSMUA_Achr7P20430_001	Banana	cytosol	61.32	56.87
Zm00001d051687_P001	Maize	cytosol	53.91	56.47
Zm00001d017859_P002	Maize	cytosol	55.56	54.66
GSMUA_Achr5P04110_001	Banana	cytosol	57.61	53.03
TraesCS6D01G262900.1	Wheat	cytosol	56.38	52.49
TraesCS6B01G310800.1	Wheat	cytosol	54.73	51.75
TraesCS6A01G282400.1	Wheat	cytosol	54.73	50.96
OQU85511	Sorghum	mitochondrion	44.44	50.7
KXG19891	Sorghum	cytosol	56.38	48.41
Os06t0318300-02	Rice	cytosol	53.09	47.78
PGSC0003DMT400011652	Potato	cytosol	34.98	43.81
Os02t0719000-01	Rice	cytosol	56.79	36.6

Protein Annotations

EntrezGene:102585476	Gene3D:2.70.50.30	MapMan:27.4.4	GO:GO:0003674	GO:GO:0005094	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0030234	GO:GO:0050790
InterPro:IPR024792	InterPro:Ig_E-set	UniProt:M1C633	PFAM:PF02115	EnsemblPlantsGene:PGSC0003DMG400023558	PGSC:PGSC0003DMG400023558
EnsemblPlants:PGSC0003DMT400060556	PRINTS:PR00492	PANTHER:PTHR10980	PANTHER:PTHR10980:SF30	InterPro:RhoGDI_dom_sf	InterPro:Rho_GDI
SUPFAM:SSF81296	UniParc:UPI000294B888	RefSeq:XP_006346809.1	SEG:seg	:	:

Description

Pollen tube RhoGDI2 [Source:PGSC_GENE;Acc:PGSC0003DMG400023558]

Coordinates

chr4:-:8745423..8749655

Molecular Weight (calculated)

27647.2 Da

IEP (calculated)

4.474

GRAVY (calculated)

-0.865

Length

243 amino acids

Sequence
(BLAST)

001: MGFDDKNKEG KEESAPVCEG KKGGIADSDS EIEHEVHENK VSRQMSESSM YTTEDEDEDE NTNKIELGPQ CTLKEQFEKD KDDESLRRWK EQLLGSVDIN
101: AVGESLDPEV KILSLEIKSP GRADIVLPIP EDGKPKSPWF VLKEGSKYHL KFTFQVNNNI VTGLKYTNTV WKTGIKVDSM KEMIGAFSPQ TEPYTHEMPE
201: ETTPSGIFAR GSYSARTKFL DDDNKCYLEI NYTFDIKKEW QAI

Best Arabidopsis Sequence Match ( AT3G07880.1 )
(BLAST)

001: MSLVSGARDM GFDDNNNNKN NKDGDDENSS SRTRADDDAL SRQMSESSLC ATEEEEDDDS KLQLGPQYTI KEHLEKDKDD ESLRKWKEQL LGSVDVTNIG
101: ETLDPEVRID SLAIISPGRP DIVLLVPENG NPKGMWFTLK EGSKYNLKFT FHVNNNIVSG LRYTNTVWKT GVKVDRAKEM LGTFSPQLEP YNHVMPEETT
201: PSGMFARGSY SARTKFLDDD NKCYLEINYS FDIRKEWPAL

Arabidopsis Description

GDI1Putative RHO GDP-dissociation inhibitor 1 [Source:UniProtKB/TrEMBL;Acc:Q541X0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.