Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS6A01G070700.2 | |
| TraesCS6B01G094700.2 | |
| TraesCS6D01G068500.2 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G07880.1 | TraesCS6A01G070700.2 | AT1G75840.1 | 10798620 |
| AT3G07880.1 | TraesCS6B01G094700.2 | AT1G75840.1 | 10798620 |
| AT3G07880.1 | TraesCS6D01G068500.2 | AT1G75840.1 | 10798620 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G282400.1 | Wheat | cytosol | 86.21 | 86.21 |
| TraesCS6B01G310800.1 | Wheat | cytosol | 80.08 | 81.32 |
| CDY31238 | Canola | cytosol | 29.89 | 73.58 |
| Zm00001d051687_P001 | Maize | cytosol | 64.75 | 72.84 |
| Zm00001d017859_P002 | Maize | cytosol | 65.13 | 68.83 |
| GSMUA_Achr7P20430_001 | Banana | cytosol | 63.6 | 63.36 |
| GSMUA_Achr9P12630_001 | Banana | cytosol | 57.47 | 63.03 |
| Bra040037.1-P | Field mustard | cytosol | 54.79 | 63.0 |
| OQU85511 | Sorghum | mitochondrion | 50.57 | 61.97 |
| VIT_00s0187g00210.t01 | Wine grape | cytosol | 54.02 | 60.78 |
| VIT_12s0059g00580.t01 | Wine grape | cytosol | 55.17 | 60.25 |
| GSMUA_Achr5P04110_001 | Banana | cytosol | 60.15 | 59.47 |
| Bra001274.1-P | Field mustard | cytosol | 48.28 | 59.43 |
| AT3G07880.1 | Thale cress | cytosol | 54.41 | 59.17 |
| PGSC0003DMT400021800 | Potato | cytosol | 52.49 | 58.8 |
| KRH14075 | Soybean | cytosol | 50.96 | 58.59 |
| Solyc05g054110.2.1 | Tomato | cytosol | 52.11 | 58.37 |
| KRH74038 | Soybean | cytosol | 52.11 | 58.37 |
| Bra036660.1-P | Field mustard | cytosol | 48.28 | 57.53 |
| AT1G62450.1 | Thale cress | cytosol | 49.04 | 57.4 |
| CDY35970 | Canola | cytosol | 54.41 | 57.26 |
| Bra029684.1-P | Field mustard | cytosol | 54.41 | 57.26 |
| Solyc04g014760.2.1 | Tomato | nucleus | 53.26 | 57.2 |
| Bra027043.1-P | Field mustard | cytosol | 49.04 | 57.14 |
| CDY19551 | Canola | cytosol | 49.04 | 57.14 |
| CDY12949 | Canola | cytosol | 49.04 | 57.14 |
| CDY39796 | Canola | cytosol | 47.89 | 57.08 |
| TraesCS3D01G414900.1 | Wheat | cytosol | 44.83 | 57.07 |
| CDY28012 | Canola | cytosol | 53.64 | 56.68 |
| CDY32048 | Canola | nucleus | 48.66 | 56.44 |
| Bra034515.1-P | Field mustard | nucleus | 48.66 | 56.44 |
| PGSC0003DMT400060556 | Potato | cytosol | 52.49 | 56.38 |
| CDY03276 | Canola | cytosol | 47.13 | 56.16 |
| KRH36543 | Soybean | cytosol | 53.26 | 56.05 |
| CDY08673 | Canola | cytosol | 47.89 | 55.8 |
| CDY21031 | Canola | cytosol | 47.51 | 55.61 |
| Bra016793.1-P | Field mustard | cytosol | 47.51 | 55.61 |
| AT1G12070.1 | Thale cress | cytosol | 47.51 | 55.61 |
| CDY15966 | Canola | cytosol | 47.51 | 55.36 |
| CDY26538 | Canola | cytosol | 47.51 | 55.36 |
| Bra026994.1-P | Field mustard | cytosol | 47.51 | 55.36 |
| KRH51157 | Soybean | cytosol | 52.49 | 55.02 |
| KRH01997 | Soybean | cytosol | 52.11 | 54.62 |
| KRH11529 | Soybean | nucleus | 53.26 | 54.51 |
| CDY62159 | Canola | cytosol | 46.74 | 54.46 |
| CDY53349 | Canola | cytosol | 46.74 | 54.46 |
| Bra019740.1-P | Field mustard | cytosol | 46.74 | 54.46 |
| Solyc11g012270.1.1 | Tomato | cytosol | 53.26 | 53.46 |
| PGSC0003DMT400034743 | Potato | cytosol | 52.49 | 52.69 |
| Os02t0719000-01 | Rice | cytosol | 68.58 | 47.48 |
| TraesCS1D01G454500.1 | Wheat | plastid | 42.15 | 33.54 |
Protein Annotations
| EnsemblPlants:TraesCS6D01G262900.1 | EnsemblPlantsGene:TraesCS6D01G262900 | Gene3D:2.70.50.30 | GO:GO:0003674 | GO:GO:0005094 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0030234 | InterPro:IPR024792 | InterPro:Ig_E-set |
| InterPro:RhoGDI_dom_sf | InterPro:Rho_GDI | PANTHER:PTHR10980 | PANTHER:PTHR10980:SF30 | PFAM:PF02115 | PRINTS:PR00492 |
| SEG:seg | SUPFAM:SSF81296 | MapMan:27.4.4 | : | : | : |
Description
No Description!
Coordinates
chr6D:+:371305485..371307416
Molecular Weight (calculated)
28117.9 Da
IEP (calculated)
4.573
GRAVY (calculated)
-0.500
Length
261 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSAVEAISC SKVADMAAAG PAEAKECAAA VAEHGNGNGG AGDAAATNGK KCGGDVAAAP HCGKGELEEE DEDGEKVPEH IDLGPILSIK DQLEKDKDDE
101: SLRRWKEQLL GSVDLNSVGE TLEPDVKIMS LSIQSPGRPD IFLPLPVEPS SGKGVWFTLK EGSPYKLKFT FSVSNNIVSG LRYTNTVWKT GIKVDSTKEM
201: LGTFSPQPEP YAYVTPEETT PSGMFARGSY SAKTKFLDDD RKCYLQINYT FDIRREWPSS G
101: SLRRWKEQLL GSVDLNSVGE TLEPDVKIMS LSIQSPGRPD IFLPLPVEPS SGKGVWFTLK EGSPYKLKFT FSVSNNIVSG LRYTNTVWKT GIKVDSTKEM
201: LGTFSPQPEP YAYVTPEETT PSGMFARGSY SAKTKFLDDD RKCYLQINYT FDIRREWPSS G
001: MSLVSGARDM GFDDNNNNKN NKDGDDENSS SRTRADDDAL SRQMSESSLC ATEEEEDDDS KLQLGPQYTI KEHLEKDKDD ESLRKWKEQL LGSVDVTNIG
101: ETLDPEVRID SLAIISPGRP DIVLLVPENG NPKGMWFTLK EGSKYNLKFT FHVNNNIVSG LRYTNTVWKT GVKVDRAKEM LGTFSPQLEP YNHVMPEETT
201: PSGMFARGSY SARTKFLDDD NKCYLEINYS FDIRKEWPAL
101: ETLDPEVRID SLAIISPGRP DIVLLVPENG NPKGMWFTLK EGSKYNLKFT FHVNNNIVSG LRYTNTVWKT GVKVDRAKEM LGTFSPQLEP YNHVMPEETT
201: PSGMFARGSY SARTKFLDDD NKCYLEINYS FDIRKEWPAL
Arabidopsis Description
GDI1Putative RHO GDP-dissociation inhibitor 1 [Source:UniProtKB/TrEMBL;Acc:Q541X0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.