Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra001274.1-P | Field mustard | cytosol | 73.75 | 83.49 |
| Bra040037.1-P | Field mustard | cytosol | 77.5 | 81.94 |
| Bra029684.1-P | Field mustard | cytosol | 84.17 | 81.45 |
| CDY35970 | Canola | cytosol | 84.17 | 81.45 |
| CDY28012 | Canola | cytosol | 82.08 | 79.76 |
| VIT_00s0187g00210.t01 | Wine grape | cytosol | 62.5 | 64.66 |
| Solyc05g054110.2.1 | Tomato | cytosol | 62.08 | 63.95 |
| PGSC0003DMT400021800 | Potato | cytosol | 62.08 | 63.95 |
| Solyc04g014760.2.1 | Tomato | nucleus | 64.58 | 63.79 |
| AT1G62450.1 | Thale cress | cytosol | 59.17 | 63.68 |
| PGSC0003DMT400060556 | Potato | cytosol | 64.17 | 63.37 |
| KRH36543 | Soybean | cytosol | 63.75 | 61.69 |
| Zm00001d051687_P001 | Maize | cytosol | 59.17 | 61.21 |
| KRH11529 | Soybean | nucleus | 65.0 | 61.18 |
| AT1G12070.1 | Thale cress | cytosol | 56.67 | 60.99 |
| GSMUA_Achr9P12630_001 | Banana | cytosol | 60.42 | 60.92 |
| KRH51157 | Soybean | cytosol | 62.5 | 60.24 |
| KRH01997 | Soybean | cytosol | 62.08 | 59.84 |
| Zm00001d017859_P002 | Maize | cytosol | 61.25 | 59.51 |
| Solyc11g012270.1.1 | Tomato | cytosol | 63.33 | 58.46 |
| GSMUA_Achr5P04110_001 | Banana | cytosol | 63.33 | 57.58 |
| PGSC0003DMT400034743 | Potato | cytosol | 62.08 | 57.31 |
| GSMUA_Achr7P20430_001 | Banana | cytosol | 61.67 | 56.49 |
| OQU85511 | Sorghum | mitochondrion | 50.0 | 56.34 |
| TraesCS6B01G310800.1 | Wheat | cytosol | 59.58 | 55.64 |
| TraesCS6A01G282400.1 | Wheat | cytosol | 59.17 | 54.41 |
| TraesCS6D01G262900.1 | Wheat | cytosol | 59.17 | 54.41 |
| Os06t0318300-02 | Rice | cytosol | 55.83 | 49.63 |
| KXG19891 | Sorghum | cytosol | 56.25 | 47.7 |
| Os02t0719000-01 | Rice | cytosol | 60.83 | 38.73 |
Protein Annotations
| Gene3D:2.70.50.30 | MapMan:27.4.4 | EntrezGene:819979 | UniProt:A0A178VK83 | ProteinID:AAF21198.1 | ProteinID:AEE74614.1 |
| EMBL:AF412276 | EMBL:AK118247 | ArrayExpress:AT3G07880 | EnsemblPlantsGene:AT3G07880 | RefSeq:AT3G07880 | TAIR:AT3G07880 |
| RefSeq:AT3G07880-TAIR-G | EnsemblPlants:AT3G07880.1 | TAIR:AT3G07880.1 | EMBL:AY085508 | EMBL:BT005578 | GO:GO:0003674 |
| GO:GO:0005094 | GO:GO:0005096 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0009653 | GO:GO:0009932 |
| GO:GO:0009987 | GO:GO:0010053 | GO:GO:0016043 | GO:GO:0016049 | GO:GO:0030154 | GO:GO:0030234 |
| GO:GO:0040007 | GO:GO:0043547 | GO:GO:0050790 | InterPro:IPR024792 | InterPro:Ig_E-set | RefSeq:NP_187445.1 |
| ProteinID:OAP06840.1 | PFAM:PF02115 | PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 |
| PO:PO:0000230 | PO:PO:0000256 | PO:PO:0000262 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PRINTS:PR00492 | PANTHER:PTHR10980 | PANTHER:PTHR10980:SF30 |
| UniProt:Q541X0 | UniProt:Q9SFC6 | InterPro:RhoGDI_dom_sf | InterPro:Rho_GDI | Symbol:SCN1 | SUPFAM:SSF81296 |
| UniParc:UPI00000013F7 | SEG:seg | : | : | : | : |
Description
GDI1Putative RHO GDP-dissociation inhibitor 1 [Source:UniProtKB/TrEMBL;Acc:Q541X0]
Coordinates
chr3:+:2513925..2515983
Molecular Weight (calculated)
27232.6 Da
IEP (calculated)
4.478
GRAVY (calculated)
-0.848
Length
240 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLVSGARDM GFDDNNNNKN NKDGDDENSS SRTRADDDAL SRQMSESSLC ATEEEEDDDS KLQLGPQYTI KEHLEKDKDD ESLRKWKEQL LGSVDVTNIG
101: ETLDPEVRID SLAIISPGRP DIVLLVPENG NPKGMWFTLK EGSKYNLKFT FHVNNNIVSG LRYTNTVWKT GVKVDRAKEM LGTFSPQLEP YNHVMPEETT
201: PSGMFARGSY SARTKFLDDD NKCYLEINYS FDIRKEWPAL
101: ETLDPEVRID SLAIISPGRP DIVLLVPENG NPKGMWFTLK EGSKYNLKFT FHVNNNIVSG LRYTNTVWKT GVKVDRAKEM LGTFSPQLEP YNHVMPEETT
201: PSGMFARGSY SARTKFLDDD NKCYLEINYS FDIRKEWPAL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.