Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os02t0120800-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G07880.1 | Os02t0120800-01 | AT1G75840.1 | 10798620 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY31238 | Canola | cytosol | 28.15 | 71.7 |
| GSMUA_Achr9P12630_001 | Banana | cytosol | 54.81 | 62.18 |
| VIT_00s0187g00210.t01 | Wine grape | cytosol | 50.74 | 59.05 |
| Bra040037.1-P | Field mustard | cytosol | 49.63 | 59.03 |
| GSMUA_Achr7P20430_001 | Banana | cytosol | 57.04 | 58.78 |
| GSMUA_Achr5P04110_001 | Banana | cytosol | 57.41 | 58.71 |
| KRH14075 | Soybean | cytosol | 48.52 | 57.71 |
| KXG19891 | Sorghum | cytosol | 60.0 | 57.24 |
| Bra001274.1-P | Field mustard | cytosol | 44.07 | 56.13 |
| VIT_12s0059g00580.t01 | Wine grape | cytosol | 49.63 | 56.07 |
| AT3G07880.1 | Thale cress | cytosol | 49.63 | 55.83 |
| PGSC0003DMT400021800 | Potato | cytosol | 48.15 | 55.79 |
| Os01t0913600-01 | Rice | plasma membrane | 44.81 | 55.76 |
| KRH74038 | Soybean | cytosol | 47.78 | 55.36 |
| Solyc05g054110.2.1 | Tomato | cytosol | 47.78 | 55.36 |
| Bra036660.1-P | Field mustard | cytosol | 44.81 | 55.25 |
| CDY39796 | Canola | cytosol | 44.44 | 54.79 |
| CDY03276 | Canola | cytosol | 44.44 | 54.79 |
| AT1G62450.1 | Thale cress | cytosol | 45.19 | 54.71 |
| CDY21031 | Canola | cytosol | 45.19 | 54.71 |
| Bra016793.1-P | Field mustard | cytosol | 45.19 | 54.71 |
| KRH51157 | Soybean | cytosol | 50.37 | 54.62 |
| Solyc04g014760.2.1 | Tomato | nucleus | 48.89 | 54.32 |
| CDY08673 | Canola | cytosol | 44.81 | 54.02 |
| CDY28012 | Canola | cytosol | 49.26 | 53.85 |
| CDY32048 | Canola | nucleus | 44.81 | 53.78 |
| Bra034515.1-P | Field mustard | nucleus | 44.81 | 53.78 |
| CDY35970 | Canola | cytosol | 49.26 | 53.63 |
| Bra029684.1-P | Field mustard | cytosol | 49.26 | 53.63 |
| CDY15966 | Canola | cytosol | 44.44 | 53.57 |
| CDY26538 | Canola | cytosol | 44.44 | 53.57 |
| Bra026994.1-P | Field mustard | cytosol | 44.44 | 53.57 |
| AT1G12070.1 | Thale cress | cytosol | 44.07 | 53.36 |
| CDY19551 | Canola | cytosol | 44.07 | 53.12 |
| CDY62159 | Canola | cytosol | 44.07 | 53.12 |
| CDY53349 | Canola | cytosol | 44.07 | 53.12 |
| Bra019740.1-P | Field mustard | cytosol | 44.07 | 53.12 |
| PGSC0003DMT400060556 | Potato | cytosol | 47.78 | 53.09 |
| KRH36543 | Soybean | cytosol | 48.52 | 52.82 |
| CDY12949 | Canola | cytosol | 43.7 | 52.68 |
| Bra027043.1-P | Field mustard | cytosol | 43.7 | 52.68 |
| KRH01997 | Soybean | cytosol | 48.52 | 52.61 |
| KRH11529 | Soybean | nucleus | 49.26 | 52.16 |
| Solyc11g012270.1.1 | Tomato | cytosol | 49.26 | 51.15 |
| PGSC0003DMT400034743 | Potato | cytosol | 48.52 | 50.38 |
| Os02t0719000-01 | Rice | cytosol | 60.37 | 43.24 |
Protein Annotations
| Gene3D:2.70.50.30 | MapMan:27.4.4 | EntrezGene:4340881 | EMBL:AK065671 | ProteinID:BAD61572.1 | ProteinID:BAD61596.1 |
| ProteinID:BAF19416.1 | ProteinID:BAS97481.1 | ncoils:Coil | ProteinID:EAZ36803.1 | GO:GO:0003674 | GO:GO:0005094 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0008150 | GO:GO:0030234 |
| GO:GO:0050790 | InterPro:IPR024792 | InterPro:Ig_E-set | EnsemblPlantsGene:Os06g0318300 | EnsemblPlants:Os06t0318300-02 | PFAM:PF02115 |
| PRINTS:PR00492 | PANTHER:PTHR10980 | PANTHER:PTHR10980:SF30 | UniProt:Q5ZA14 | InterPro:RhoGDI_dom_sf | InterPro:Rho_GDI |
| SUPFAM:SSF81296 | UniParc:UPI00004505E0 | RefSeq:XP_015644290.1 | SEG:seg | : | : |
Description
Similar to Rho GDP dissociation inhibitor 2 (Fragment). (Os06t0318300-01);Similar to Rho GDP-dissociation inhibitor 1 (Rho GDI-1) (AtRhoGDI1). (Os06t0318300-02)
Coordinates
chr6:-:12322915..12326041
Molecular Weight (calculated)
29960.5 Da
IEP (calculated)
4.180
GRAVY (calculated)
-0.714
Length
270 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSAAGEPSS SSAAAAAISC SSSNDDEKPP PSLEGKELRR VEEEEPAAAA RPEKLTEGSS RAAEAEEEEE VVEDEEDDDE EDEGKVAEAI DLGPRVSIKE
101: QLEMDKEDES LRRWKEQLLG SVDLNSVGES LEPDVRITSL CILSPGRPDV LLPLPVEPSN SKEPWFTLKE GSTYRLKFTF SVSSNIVSGL RYTNTVWKAG
201: IRVDKTKEML GTFSPQLEPY TYVTPEETTP SGVFARGSYS AKTKFVDDDR KCYLEINYTF DIRRDWPCKS
101: QLEMDKEDES LRRWKEQLLG SVDLNSVGES LEPDVRITSL CILSPGRPDV LLPLPVEPSN SKEPWFTLKE GSTYRLKFTF SVSSNIVSGL RYTNTVWKAG
201: IRVDKTKEML GTFSPQLEPY TYVTPEETTP SGVFARGSYS AKTKFVDDDR KCYLEINYTF DIRRDWPCKS
001: MSLVSGARDM GFDDNNNNKN NKDGDDENSS SRTRADDDAL SRQMSESSLC ATEEEEDDDS KLQLGPQYTI KEHLEKDKDD ESLRKWKEQL LGSVDVTNIG
101: ETLDPEVRID SLAIISPGRP DIVLLVPENG NPKGMWFTLK EGSKYNLKFT FHVNNNIVSG LRYTNTVWKT GVKVDRAKEM LGTFSPQLEP YNHVMPEETT
201: PSGMFARGSY SARTKFLDDD NKCYLEINYS FDIRKEWPAL
101: ETLDPEVRID SLAIISPGRP DIVLLVPENG NPKGMWFTLK EGSKYNLKFT FHVNNNIVSG LRYTNTVWKT GVKVDRAKEM LGTFSPQLEP YNHVMPEETT
201: PSGMFARGSY SARTKFLDDD NKCYLEINYS FDIRKEWPAL
Arabidopsis Description
GDI1Putative RHO GDP-dissociation inhibitor 1 [Source:UniProtKB/TrEMBL;Acc:Q541X0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.