Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os02t0120800-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G07880.1 | Os02t0120800-01 | AT1G75840.1 | 10798620 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY31238 | Canola | cytosol | 20.42 | 72.64 |
| Zm00001d051687_P001 | Maize | cytosol | 44.3 | 71.98 |
| Zm00001d017859_P002 | Maize | cytosol | 46.15 | 70.45 |
| TraesCS6D01G262900.1 | Wheat | cytosol | 47.48 | 68.58 |
| TraesCS6A01G282400.1 | Wheat | cytosol | 47.48 | 68.58 |
| TraesCS6B01G310800.1 | Wheat | cytosol | 46.68 | 68.48 |
| VIT_00s0187g00210.t01 | Wine grape | cytosol | 39.79 | 64.66 |
| Bra040037.1-P | Field mustard | cytosol | 38.73 | 64.32 |
| OQU85511 | Sorghum | mitochondrion | 35.81 | 63.38 |
| Bra001274.1-P | Field mustard | cytosol | 35.54 | 63.21 |
| GSMUA_Achr9P12630_001 | Banana | cytosol | 39.52 | 62.6 |
| GSMUA_Achr7P20430_001 | Banana | cytosol | 42.71 | 61.45 |
| Bra029684.1-P | Field mustard | cytosol | 40.05 | 60.89 |
| CDY35970 | Canola | cytosol | 40.05 | 60.89 |
| AT3G07880.1 | Thale cress | cytosol | 38.73 | 60.83 |
| Os06t0318300-02 | Rice | cytosol | 43.24 | 60.37 |
| KRH14075 | Soybean | cytosol | 36.07 | 59.91 |
| CDY28012 | Canola | cytosol | 38.99 | 59.51 |
| VIT_12s0059g00580.t01 | Wine grape | cytosol | 37.67 | 59.41 |
| PGSC0003DMT400021800 | Potato | cytosol | 36.6 | 59.23 |
| AT1G62450.1 | Thale cress | cytosol | 35.01 | 59.19 |
| Bra036660.1-P | Field mustard | cytosol | 34.22 | 58.9 |
| KRH36543 | Soybean | cytosol | 38.73 | 58.87 |
| Solyc05g054110.2.1 | Tomato | cytosol | 36.34 | 58.8 |
| CDY12949 | Canola | cytosol | 34.75 | 58.48 |
| Bra027043.1-P | Field mustard | cytosol | 34.75 | 58.48 |
| CDY19551 | Canola | cytosol | 34.75 | 58.48 |
| CDY39796 | Canola | cytosol | 33.95 | 58.45 |
| KRH74038 | Soybean | cytosol | 36.07 | 58.37 |
| GSMUA_Achr5P04110_001 | Banana | cytosol | 40.85 | 58.33 |
| CDY32048 | Canola | nucleus | 34.75 | 58.22 |
| Bra034515.1-P | Field mustard | nucleus | 34.75 | 58.22 |
| CDY03276 | Canola | cytosol | 33.69 | 57.99 |
| KRH11529 | Soybean | nucleus | 38.99 | 57.65 |
| CDY08673 | Canola | cytosol | 34.22 | 57.59 |
| Solyc04g014760.2.1 | Tomato | nucleus | 36.87 | 57.2 |
| Bra026994.1-P | Field mustard | cytosol | 33.95 | 57.14 |
| CDY26538 | Canola | cytosol | 33.95 | 57.14 |
| Os01t0913600-01 | Rice | plasma membrane | 32.89 | 57.14 |
| CDY15966 | Canola | cytosol | 33.95 | 57.14 |
| PGSC0003DMT400060556 | Potato | cytosol | 36.6 | 56.79 |
| KRH51157 | Soybean | cytosol | 37.4 | 56.63 |
| AT1G12070.1 | Thale cress | cytosol | 33.42 | 56.5 |
| CDY62159 | Canola | cytosol | 33.42 | 56.25 |
| CDY53349 | Canola | cytosol | 33.42 | 56.25 |
| Bra019740.1-P | Field mustard | cytosol | 33.42 | 56.25 |
| KRH01997 | Soybean | cytosol | 36.6 | 55.42 |
| CDY21031 | Canola | cytosol | 32.63 | 55.16 |
| Bra016793.1-P | Field mustard | cytosol | 32.63 | 55.16 |
| Solyc11g012270.1.1 | Tomato | cytosol | 37.93 | 55.0 |
| PGSC0003DMT400034743 | Potato | cytosol | 37.67 | 54.62 |
Protein Annotations
| Gene3D:2.70.50.30 | MapMan:27.4.4 | EntrezGene:4330540 | EMBL:AK073093 | ProteinID:BAF09856.1 | ProteinID:BAS80630.1 |
| GO:GO:0003674 | GO:GO:0005094 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0008150 | GO:GO:0030234 | GO:GO:0050790 | InterPro:IPR024792 | InterPro:Ig_E-set | EnsemblPlantsGene:Os02g0719000 |
| EnsemblPlants:Os02t0719000-01 | PFAM:PF02115 | PANTHER:PTHR10980 | PANTHER:PTHR10980:SF30 | UniProt:Q0DY32 | InterPro:RhoGDI_dom_sf |
| InterPro:Rho_GDI | SUPFAM:SSF81296 | UniParc:UPI0000DF083E | RefSeq:XP_015624030.1 | SEG:seg | : |
Description
Similar to Rho GDP-dissociation inhibitor 1 (Rho GDI-1) (AtRhoGDI1). (Os02t0719000-01)
Coordinates
chr2:+:29827548..29830453
Molecular Weight (calculated)
41647.8 Da
IEP (calculated)
6.652
GRAVY (calculated)
-0.314
Length
377 amino acids
Sequence
(BLAST)
(BLAST)
001: MRADRAELRE LKPPYPLSAP GLPLLDPTIC PRHASSRASR LACVRARRAA PSFWSLAPRY FPLVPNPESA SASVLALLLW YLCSRLLCLA TLLPPPHCLL
101: PWFGSFCSWV DAGCVRACVR AEAMSSAVDA ISCSKGIAAP PTEEATKERV AVVGKNGGVE HGGDAATMNG KQCGEAPHCR KESNEEEEDD EEKAPKAIDL
201: GPRVSIKDQL EKDKDDESLR RWKEQLLGSV DLNSVGETLE PDVKIMSLAI LSPGRPDIFL PLPVEPNAKG VWFTLKEGSL YKLKFTFSVS NNIVSGLRYT
301: NAVWKTGIKV DSHKEMLGTF SPQPEPYTYV TPEETTPSGM FARGSYSART KFLDDDRKCY LEINYTFDIR REWPALS
101: PWFGSFCSWV DAGCVRACVR AEAMSSAVDA ISCSKGIAAP PTEEATKERV AVVGKNGGVE HGGDAATMNG KQCGEAPHCR KESNEEEEDD EEKAPKAIDL
201: GPRVSIKDQL EKDKDDESLR RWKEQLLGSV DLNSVGETLE PDVKIMSLAI LSPGRPDIFL PLPVEPNAKG VWFTLKEGSL YKLKFTFSVS NNIVSGLRYT
301: NAVWKTGIKV DSHKEMLGTF SPQPEPYTYV TPEETTPSGM FARGSYSART KFLDDDRKCY LEINYTFDIR REWPALS
001: MSLVSGARDM GFDDNNNNKN NKDGDDENSS SRTRADDDAL SRQMSESSLC ATEEEEDDDS KLQLGPQYTI KEHLEKDKDD ESLRKWKEQL LGSVDVTNIG
101: ETLDPEVRID SLAIISPGRP DIVLLVPENG NPKGMWFTLK EGSKYNLKFT FHVNNNIVSG LRYTNTVWKT GVKVDRAKEM LGTFSPQLEP YNHVMPEETT
201: PSGMFARGSY SARTKFLDDD NKCYLEINYS FDIRKEWPAL
101: ETLDPEVRID SLAIISPGRP DIVLLVPENG NPKGMWFTLK EGSKYNLKFT FHVNNNIVSG LRYTNTVWKT GVKVDRAKEM LGTFSPQLEP YNHVMPEETT
201: PSGMFARGSY SARTKFLDDD NKCYLEINYS FDIRKEWPAL
Arabidopsis Description
GDI1Putative RHO GDP-dissociation inhibitor 1 [Source:UniProtKB/TrEMBL;Acc:Q541X0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.