Factsheet for PGSC0003DMT400021800

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g054110.2.1	Tomato	cytosol	99.14	99.14
PGSC0003DMT400060556	Potato	cytosol	76.82	73.66
PGSC0003DMT400034743	Potato	cytosol	72.96	65.38
VIT_00s0187g00210.t01	Wine grape	cytosol	64.38	64.66
Bra040037.1-P	Field mustard	cytosol	62.66	64.32
Bra001274.1-P	Field mustard	cytosol	58.37	64.15
KRH01997	Soybean	cytosol	67.38	63.05
KRH51157	Soybean	cytosol	67.38	63.05
KRH36543	Soybean	cytosol	66.95	62.9
AT3G07880.1	Thale cress	cytosol	63.95	62.08
KRH11529	Soybean	nucleus	67.38	61.57
Bra029684.1-P	Field mustard	cytosol	63.95	60.08
CDY35970	Canola	cytosol	63.95	60.08
CDY28012	Canola	cytosol	63.52	59.92
Zm00001d051687_P001	Maize	cytosol	58.8	59.05
GSMUA_Achr9P12630_001	Banana	cytosol	58.8	57.56
Zm00001d017859_P002	Maize	cytosol	59.66	56.28
GSMUA_Achr7P20430_001	Banana	cytosol	62.23	55.34
TraesCS6B01G310800.1	Wheat	cytosol	57.94	52.53
TraesCS6A01G282400.1	Wheat	cytosol	58.8	52.49
TraesCS6D01G262900.1	Wheat	cytosol	58.8	52.49
GSMUA_Achr5P04110_001	Banana	cytosol	59.23	52.27
OQU85511	Sorghum	mitochondrion	46.35	50.7
Os06t0318300-02	Rice	cytosol	55.79	48.15
KXG19891	Sorghum	cytosol	57.08	47.0
PGSC0003DMT400011652	Potato	cytosol	37.34	44.85
Os02t0719000-01	Rice	cytosol	59.23	36.6

Protein Annotations

EntrezGene:102592782	Gene3D:2.70.50.30	MapMan:27.4.4	GO:GO:0003674	GO:GO:0005094	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0030234	GO:GO:0050790
InterPro:IPR024792	InterPro:Ig_E-set	UniProt:M1AFQ7	PFAM:PF02115	EnsemblPlantsGene:PGSC0003DMG400008461	PGSC:PGSC0003DMG400008461
EnsemblPlants:PGSC0003DMT400021800	PRINTS:PR00492	PANTHER:PTHR10980	PANTHER:PTHR10980:SF30	InterPro:RhoGDI_dom_sf	InterPro:Rho_GDI
SUPFAM:SSF81296	UniParc:UPI000294A2ED	RefSeq:XP_006365854.1	SEG:seg	:	:

Description

Pollen tube RhoGDI2 [Source:PGSC_GENE;Acc:PGSC0003DMG400008461]

Coordinates

chr5:+:49768383..49773709

Molecular Weight (calculated)

26284.6 Da

IEP (calculated)

4.494

GRAVY (calculated)

-0.807

Length

233 amino acids

Sequence
(BLAST)

001: MHSDKEGKGG TATPIAESDS EIEHEPGEKN VSRQMSESSL YTTEDEEEDE THNKIELGPQ CTLKEQFEKD KDDESLRRWK EQLLGSVDIN AVGESLDPDV
101: KILSLEIKSP GRPDIVLPIP EGGKPQCPWF TLKEGSKYSL KFSFLVTNNI VTGLKYTNTV WKTGLKVDST KQMIGAFSPQ SEPYTHEMPE DTTPSGMFAR
201: GSYSARTKFL DDDNKCYLEI NYTFDIKKEW LAT

Best Arabidopsis Sequence Match ( AT3G07880.1 )
(BLAST)

001: MSLVSGARDM GFDDNNNNKN NKDGDDENSS SRTRADDDAL SRQMSESSLC ATEEEEDDDS KLQLGPQYTI KEHLEKDKDD ESLRKWKEQL LGSVDVTNIG
101: ETLDPEVRID SLAIISPGRP DIVLLVPENG NPKGMWFTLK EGSKYNLKFT FHVNNNIVSG LRYTNTVWKT GVKVDRAKEM LGTFSPQLEP YNHVMPEETT
201: PSGMFARGSY SARTKFLDDD NKCYLEINYS FDIRKEWPAL

Arabidopsis Description

GDI1Putative RHO GDP-dissociation inhibitor 1 [Source:UniProtKB/TrEMBL;Acc:Q541X0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.