Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS6A01G070700.2 | |
| TraesCS6B01G094700.2 | |
| TraesCS6D01G068500.2 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G07880.1 | TraesCS6A01G070700.2 | AT1G75840.1 | 10798620 |
| AT3G07880.1 | TraesCS6B01G094700.2 | AT1G75840.1 | 10798620 |
| AT3G07880.1 | TraesCS6D01G068500.2 | AT1G75840.1 | 10798620 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G282400.1 | Wheat | cytosol | 81.32 | 80.08 |
| TraesCS6D01G262900.1 | Wheat | cytosol | 81.32 | 80.08 |
| Zm00001d017859_P002 | Maize | cytosol | 73.54 | 76.52 |
| CDY31238 | Canola | cytosol | 30.35 | 73.58 |
| Zm00001d051687_P001 | Maize | cytosol | 64.98 | 71.98 |
| OQU85511 | Sorghum | mitochondrion | 51.75 | 62.44 |
| VIT_00s0187g00210.t01 | Wine grape | cytosol | 56.03 | 62.07 |
| GSMUA_Achr9P12630_001 | Banana | cytosol | 56.81 | 61.34 |
| Bra040037.1-P | Field mustard | cytosol | 53.31 | 60.35 |
| AT3G07880.1 | Thale cress | cytosol | 55.64 | 59.58 |
| KRH14075 | Soybean | cytosol | 52.14 | 59.03 |
| VIT_12s0059g00580.t01 | Wine grape | cytosol | 54.86 | 59.0 |
| Bra001274.1-P | Field mustard | cytosol | 48.64 | 58.96 |
| GSMUA_Achr7P20430_001 | Banana | cytosol | 59.53 | 58.4 |
| Bra029684.1-P | Field mustard | cytosol | 56.03 | 58.06 |
| CDY35970 | Canola | cytosol | 56.03 | 58.06 |
| GSMUA_Achr5P04110_001 | Banana | cytosol | 59.53 | 57.95 |
| PGSC0003DMT400021800 | Potato | cytosol | 52.53 | 57.94 |
| CDY15966 | Canola | cytosol | 50.19 | 57.59 |
| CDY26538 | Canola | cytosol | 50.19 | 57.59 |
| Bra026994.1-P | Field mustard | cytosol | 50.19 | 57.59 |
| Bra036660.1-P | Field mustard | cytosol | 49.03 | 57.53 |
| CDY21031 | Canola | cytosol | 49.81 | 57.4 |
| Bra016793.1-P | Field mustard | cytosol | 49.81 | 57.4 |
| CDY12949 | Canola | cytosol | 49.81 | 57.14 |
| CDY19551 | Canola | cytosol | 49.81 | 57.14 |
| Bra027043.1-P | Field mustard | cytosol | 49.81 | 57.14 |
| KRH74038 | Soybean | cytosol | 51.75 | 57.08 |
| Solyc05g054110.2.1 | Tomato | cytosol | 51.75 | 57.08 |
| CDY39796 | Canola | cytosol | 48.64 | 57.08 |
| AT1G62450.1 | Thale cress | cytosol | 49.42 | 56.95 |
| Bra034515.1-P | Field mustard | nucleus | 49.81 | 56.89 |
| CDY32048 | Canola | nucleus | 49.81 | 56.89 |
| KRH36543 | Soybean | cytosol | 54.86 | 56.85 |
| CDY28012 | Canola | cytosol | 54.47 | 56.68 |
| AT1G12070.1 | Thale cress | cytosol | 49.03 | 56.5 |
| CDY08673 | Canola | cytosol | 49.03 | 56.25 |
| CDY03276 | Canola | cytosol | 47.86 | 56.16 |
| CDY62159 | Canola | cytosol | 48.64 | 55.8 |
| Bra019740.1-P | Field mustard | cytosol | 48.64 | 55.8 |
| CDY53349 | Canola | cytosol | 48.64 | 55.8 |
| TraesCS3B01G454500.1 | Wheat | cytosol | 44.36 | 55.61 |
| Solyc04g014760.2.1 | Tomato | nucleus | 52.53 | 55.56 |
| KRH51157 | Soybean | cytosol | 53.7 | 55.42 |
| KRH11529 | Soybean | nucleus | 54.86 | 55.29 |
| PGSC0003DMT400060556 | Potato | cytosol | 51.75 | 54.73 |
| KRH01997 | Soybean | cytosol | 52.92 | 54.62 |
| Solyc11g012270.1.1 | Tomato | cytosol | 51.36 | 50.77 |
| PGSC0003DMT400034743 | Potato | cytosol | 50.58 | 50.0 |
| Os02t0719000-01 | Rice | cytosol | 68.48 | 46.68 |
| TraesCS1B01G480500.2 | Wheat | cytosol, plastid | 40.86 | 32.81 |
Protein Annotations
| EnsemblPlants:TraesCS6B01G310800.1 | EnsemblPlantsGene:TraesCS6B01G310800 | Gene3D:2.70.50.30 | GO:GO:0003674 | GO:GO:0005094 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0030234 | InterPro:IPR024792 | InterPro:Ig_E-set |
| InterPro:RhoGDI_dom_sf | InterPro:Rho_GDI | PANTHER:PTHR10980 | PANTHER:PTHR10980:SF30 | PFAM:PF02115 | PRINTS:PR00492 |
| SEG:seg | SUPFAM:SSF81296 | MapMan:27.4.4 | : | : | : |
Description
No Description!
Coordinates
chr6B:+:556497332..556499280
Molecular Weight (calculated)
27727.5 Da
IEP (calculated)
4.569
GRAVY (calculated)
-0.418
Length
257 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSAVEAISC SKVADIAAAG LAEAKECAAA VAEHGGADAA AAATNGKKCG GDVAAPPHCG KGELEEDDED GEKVPEHIDL GPILSIKDQL EKDKDDESLR
101: RWKEQLLGSV DLNSVGETLE PDVKIMSLSI QSPGRPDIFL PLPVEASGKG VWFTLKEGSP YKLKFTFSVS NNIVSGLRYT NTVWKTGIKV DSAKEMLGTF
201: SPQPEPYAYV TPEETTPSGM FARGSYSAKT KFLDDDRKCY LQINYTFDIR REWPSSG
101: RWKEQLLGSV DLNSVGETLE PDVKIMSLSI QSPGRPDIFL PLPVEASGKG VWFTLKEGSP YKLKFTFSVS NNIVSGLRYT NTVWKTGIKV DSAKEMLGTF
201: SPQPEPYAYV TPEETTPSGM FARGSYSAKT KFLDDDRKCY LQINYTFDIR REWPSSG
001: MSLVSGARDM GFDDNNNNKN NKDGDDENSS SRTRADDDAL SRQMSESSLC ATEEEEDDDS KLQLGPQYTI KEHLEKDKDD ESLRKWKEQL LGSVDVTNIG
101: ETLDPEVRID SLAIISPGRP DIVLLVPENG NPKGMWFTLK EGSKYNLKFT FHVNNNIVSG LRYTNTVWKT GVKVDRAKEM LGTFSPQLEP YNHVMPEETT
201: PSGMFARGSY SARTKFLDDD NKCYLEINYS FDIRKEWPAL
101: ETLDPEVRID SLAIISPGRP DIVLLVPENG NPKGMWFTLK EGSKYNLKFT FHVNNNIVSG LRYTNTVWKT GVKVDRAKEM LGTFSPQLEP YNHVMPEETT
201: PSGMFARGSY SARTKFLDDD NKCYLEINYS FDIRKEWPAL
Arabidopsis Description
GDI1Putative RHO GDP-dissociation inhibitor 1 [Source:UniProtKB/TrEMBL;Acc:Q541X0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.