Factsheet for Bra040037.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003739.1-P
Bra008227.1-P
Bra015807.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G07880.1	Bra003739.1-P	AT1G75840.1	10798620
AT3G07880.1	Bra008227.1-P	AT1G75840.1	10798620
AT3G07880.1	Bra015807.1-P	AT1G75840.1	10798620

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra001274.1-P	Field mustard	cytosol	79.3	84.91
AT3G07880.1	Thale cress	cytosol	81.94	77.5
Bra029684.1-P	Field mustard	cytosol	84.58	77.42
Bra036660.1-P	Field mustard	cytosol	60.79	63.01
PGSC0003DMT400021800	Potato	cytosol	64.32	62.66
Solyc05g054110.2.1	Tomato	cytosol	63.88	62.23
Zm00001d051687_P001	Maize	cytosol	63.44	62.07
Solyc04g014760.2.1	Tomato	nucleus	66.08	61.73
Bra034515.1-P	Field mustard	nucleus	60.79	61.33
Bra026994.1-P	Field mustard	cytosol	59.91	60.71
PGSC0003DMT400060556	Potato	cytosol	64.76	60.49
Bra027043.1-P	Field mustard	cytosol	59.47	60.27
Bra016793.1-P	Field mustard	cytosol	59.03	60.09
VIT_00s0187g00210.t01	Wine grape	cytosol	61.23	59.91
KRH36543	Soybean	cytosol	65.2	59.68
GSMUA_Achr9P12630_001	Banana	cytosol	62.56	59.66
Zm00001d017859_P002	Maize	cytosol	63.88	58.7
Bra019740.1-P	Field mustard	cytosol	57.27	58.04
KRH11529	Soybean	nucleus	64.76	57.65
KRH01997	Soybean	cytosol	62.11	56.63
Solyc11g012270.1.1	Tomato	cytosol	64.32	56.15
GSMUA_Achr7P20430_001	Banana	cytosol	64.76	56.11
KRH51157	Soybean	cytosol	61.23	55.82
OQU85511	Sorghum	mitochondrion	51.98	55.4
PGSC0003DMT400034743	Potato	cytosol	63.44	55.38
TraesCS6D01G262900.1	Wheat	cytosol	63.0	54.79
TraesCS6B01G310800.1	Wheat	cytosol	60.35	53.31
TraesCS6A01G282400.1	Wheat	cytosol	60.79	52.87
GSMUA_Achr5P04110_001	Banana	cytosol	60.79	52.27
Os06t0318300-02	Rice	cytosol	59.03	49.63
KXG19891	Sorghum	cytosol	59.91	48.06
Os02t0719000-01	Rice	cytosol	64.32	38.73

Protein Annotations

Gene3D:2.70.50.30	MapMan:27.4.4	EnsemblPlantsGene:Bra040037	EnsemblPlants:Bra040037.1	EnsemblPlants:Bra040037.1-P	GO:GO:0003674
GO:GO:0005094	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150
GO:GO:0030234	GO:GO:0050790	InterPro:IPR024792	InterPro:Ig_E-set	UniProt:M4FG12	PFAM:PF02115
PRINTS:PR00492	PANTHER:PTHR10980	PANTHER:PTHR10980:SF30	InterPro:RhoGDI_dom_sf	InterPro:Rho_GDI	SUPFAM:SSF81296
UniParc:UPI0002544752	SEG:seg	:	:	:	:

Description

AT3G07880 (E=4e-105) | Rho GDP-dissociation inhibitor family protein

Coordinates

chrA01:-:27833801..27835093

Molecular Weight (calculated)

25752.1 Da

IEP (calculated)

4.551

GRAVY (calculated)

-0.765

Length

227 amino acids

Sequence
(BLAST)

001: MDNNNKNNEE NGNTSKTASD DEGVGSVGRQ MSESSLCVTE EEEEDDSKLH LGPQYTIKEH LEKDKDDESL RKWKEQLLGS VDVTNIGETL DPEVRIISLV
101: ILSPGRPDIV LMVPENGNPK GMWFTLKEGS RYCLKFTFQV NNNIVSGLRY TNTVWKTGVK VDRGKEMLGP FSPQLEPYNH VMPEETTPSG MFARGSYSAR
201: TKFLDDDNKC YLEINYSFDI RKEWPAV

Best Arabidopsis Sequence Match ( AT3G07880.1 )
(BLAST)

001: MSLVSGARDM GFDDNNNNKN NKDGDDENSS SRTRADDDAL SRQMSESSLC ATEEEEDDDS KLQLGPQYTI KEHLEKDKDD ESLRKWKEQL LGSVDVTNIG
101: ETLDPEVRID SLAIISPGRP DIVLLVPENG NPKGMWFTLK EGSKYNLKFT FHVNNNIVSG LRYTNTVWKT GVKVDRAKEM LGTFSPQLEP YNHVMPEETT
201: PSGMFARGSY SARTKFLDDD NKCYLEINYS FDIRKEWPAL

Arabidopsis Description

GDI1Putative RHO GDP-dissociation inhibitor 1 [Source:UniProtKB/TrEMBL;Acc:Q541X0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.