Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra003739.1-P | |
| Bra008227.1-P | |
| Bra015807.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G07880.1 | Bra003739.1-P | AT1G75840.1 | 10798620 |
| AT3G07880.1 | Bra008227.1-P | AT1G75840.1 | 10798620 |
| AT3G07880.1 | Bra015807.1-P | AT1G75840.1 | 10798620 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra040037.1-P | Field mustard | cytosol | 84.91 | 79.3 |
| AT3G07880.1 | Thale cress | cytosol | 83.49 | 73.75 |
| Bra029684.1-P | Field mustard | cytosol | 84.43 | 72.18 |
| Bra036660.1-P | Field mustard | cytosol | 60.85 | 58.9 |
| VIT_00s0187g00210.t01 | Wine grape | cytosol | 64.15 | 58.62 |
| Solyc04g014760.2.1 | Tomato | nucleus | 66.98 | 58.44 |
| PGSC0003DMT400060556 | Potato | cytosol | 66.98 | 58.44 |
| PGSC0003DMT400021800 | Potato | cytosol | 64.15 | 58.37 |
| Solyc05g054110.2.1 | Tomato | cytosol | 63.68 | 57.94 |
| Bra026994.1-P | Field mustard | cytosol | 60.38 | 57.14 |
| Bra016793.1-P | Field mustard | cytosol | 59.91 | 56.95 |
| Bra034515.1-P | Field mustard | nucleus | 60.38 | 56.89 |
| KRH11529 | Soybean | nucleus | 67.92 | 56.47 |
| KRH36543 | Soybean | cytosol | 65.57 | 56.05 |
| Bra027043.1-P | Field mustard | cytosol | 58.96 | 55.8 |
| Zm00001d051687_P001 | Maize | cytosol | 60.85 | 55.6 |
| KRH51157 | Soybean | cytosol | 64.62 | 55.02 |
| KRH01997 | Soybean | cytosol | 64.62 | 55.02 |
| Bra019740.1-P | Field mustard | cytosol | 58.02 | 54.91 |
| Solyc11g012270.1.1 | Tomato | cytosol | 66.51 | 54.23 |
| PGSC0003DMT400034743 | Potato | cytosol | 66.04 | 53.85 |
| GSMUA_Achr9P12630_001 | Banana | cytosol | 60.38 | 53.78 |
| GSMUA_Achr7P20430_001 | Banana | cytosol | 65.57 | 53.05 |
| Zm00001d017859_P002 | Maize | cytosol | 61.79 | 53.04 |
| GSMUA_Achr5P04110_001 | Banana | cytosol | 61.32 | 49.24 |
| TraesCS6A01G282400.1 | Wheat | cytosol | 60.38 | 49.04 |
| OQU85511 | Sorghum | mitochondrion | 49.06 | 48.83 |
| TraesCS6B01G310800.1 | Wheat | cytosol | 58.96 | 48.64 |
| TraesCS6D01G262900.1 | Wheat | cytosol | 59.43 | 48.28 |
| Os06t0318300-02 | Rice | cytosol | 56.13 | 44.07 |
| KXG19891 | Sorghum | cytosol | 58.02 | 43.46 |
| Os02t0719000-01 | Rice | cytosol | 63.21 | 35.54 |
Protein Annotations
| Gene3D:2.70.50.30 | MapMan:27.4.4 | EnsemblPlantsGene:Bra001274 | EnsemblPlants:Bra001274.1 | EnsemblPlants:Bra001274.1-P | GO:GO:0003674 |
| GO:GO:0005094 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0008150 |
| GO:GO:0030234 | GO:GO:0050790 | InterPro:IPR024792 | InterPro:Ig_E-set | UniProt:M4CAP5 | PFAM:PF02115 |
| PANTHER:PTHR10980 | PANTHER:PTHR10980:SF30 | InterPro:RhoGDI_dom_sf | InterPro:Rho_GDI | SUPFAM:SSF81296 | UniParc:UPI00025404DA |
| SEG:seg | : | : | : | : | : |
Description
AT3G07880 (E=4e-088) | Rho GDP-dissociation inhibitor family protein
Coordinates
chrA03:+:15604785..15605913
Molecular Weight (calculated)
24066.0 Da
IEP (calculated)
4.560
GRAVY (calculated)
-0.754
Length
212 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGDDESTSR THRHDGTDDE GVESLGRQMS ESSICATEEE EEDEDSKLHL GPQYTIKEHL EKDKDDESLR KWKEQLLGSV DVTNIGETLD PEVKIISLAI
101: LSPGRPDIVL MVPENGNPKG MWFTLKEGSK YCLKFTFHVN NNIVSGLRYT NTVWKTGVKV EPYNHVMPEE TTPSGLFARG SYSARTKFLD DDNKCYLEIN
201: YSFDIRKEWP AV
101: LSPGRPDIVL MVPENGNPKG MWFTLKEGSK YCLKFTFHVN NNIVSGLRYT NTVWKTGVKV EPYNHVMPEE TTPSGLFARG SYSARTKFLD DDNKCYLEIN
201: YSFDIRKEWP AV
001: MSLVSGARDM GFDDNNNNKN NKDGDDENSS SRTRADDDAL SRQMSESSLC ATEEEEDDDS KLQLGPQYTI KEHLEKDKDD ESLRKWKEQL LGSVDVTNIG
101: ETLDPEVRID SLAIISPGRP DIVLLVPENG NPKGMWFTLK EGSKYNLKFT FHVNNNIVSG LRYTNTVWKT GVKVDRAKEM LGTFSPQLEP YNHVMPEETT
201: PSGMFARGSY SARTKFLDDD NKCYLEINYS FDIRKEWPAL
101: ETLDPEVRID SLAIISPGRP DIVLLVPENG NPKGMWFTLK EGSKYNLKFT FHVNNNIVSG LRYTNTVWKT GVKVDRAKEM LGTFSPQLEP YNHVMPEETT
201: PSGMFARGSY SARTKFLDDD NKCYLEINYS FDIRKEWPAL
Arabidopsis Description
GDI1Putative RHO GDP-dissociation inhibitor 1 [Source:UniProtKB/TrEMBL;Acc:Q541X0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.