Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d015036_P005 | |
| Zm00001d053899_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G07880.1 | Zm00001d015036_P005 | AT1G75840.1 | 10798620 |
| AT3G07880.1 | Zm00001d053899_P001 | AT1G75840.1 | 10798620 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d017859_P002 | Maize | cytosol | 78.88 | 74.09 |
| CDY31238 | Canola | cytosol | 31.47 | 68.87 |
| TraesCS6A01G282400.1 | Wheat | cytosol | 73.28 | 65.13 |
| TraesCS6B01G310800.1 | Wheat | cytosol | 71.98 | 64.98 |
| TraesCS6D01G262900.1 | Wheat | cytosol | 72.84 | 64.75 |
| Bra040037.1-P | Field mustard | cytosol | 62.07 | 63.44 |
| OQU85511 | Sorghum | mitochondrion | 57.76 | 62.91 |
| GSMUA_Achr9P12630_001 | Banana | cytosol | 63.79 | 62.18 |
| Bra001274.1-P | Field mustard | cytosol | 55.6 | 60.85 |
| GSMUA_Achr7P20430_001 | Banana | cytosol | 68.53 | 60.69 |
| KRH14075 | Soybean | cytosol | 59.05 | 60.35 |
| VIT_00s0187g00210.t01 | Wine grape | cytosol | 60.34 | 60.34 |
| AT3G07880.1 | Thale cress | cytosol | 61.21 | 59.17 |
| VIT_12s0059g00580.t01 | Wine grape | cytosol | 60.78 | 59.0 |
| PGSC0003DMT400021800 | Potato | cytosol | 59.05 | 58.8 |
| KRH74038 | Soybean | cytosol | 59.05 | 58.8 |
| Solyc05g054110.2.1 | Tomato | cytosol | 58.62 | 58.37 |
| GSMUA_Achr5P04110_001 | Banana | cytosol | 64.66 | 56.82 |
| Bra029684.1-P | Field mustard | cytosol | 60.34 | 56.45 |
| CDY35970 | Canola | cytosol | 60.34 | 56.45 |
| Zm00001d010398_P001 | Maize | cytosol | 51.29 | 56.13 |
| AT1G62450.1 | Thale cress | cytosol | 53.88 | 56.05 |
| AT1G12070.1 | Thale cress | cytosol | 53.88 | 56.05 |
| Bra036660.1-P | Field mustard | cytosol | 52.59 | 55.71 |
| CDY28012 | Canola | cytosol | 59.05 | 55.47 |
| CDY53349 | Canola | cytosol | 53.45 | 55.36 |
| CDY26538 | Canola | cytosol | 53.45 | 55.36 |
| Bra019740.1-P | Field mustard | cytosol | 53.45 | 55.36 |
| Bra026994.1-P | Field mustard | cytosol | 53.45 | 55.36 |
| CDY15966 | Canola | cytosol | 53.45 | 55.36 |
| Zm00001d038046_P003 | Maize | cytosol | 51.29 | 55.35 |
| CDY39796 | Canola | cytosol | 52.16 | 55.25 |
| CDY03276 | Canola | cytosol | 52.16 | 55.25 |
| KRH36543 | Soybean | cytosol | 59.05 | 55.24 |
| Bra016793.1-P | Field mustard | cytosol | 53.02 | 55.16 |
| CDY21031 | Canola | cytosol | 53.02 | 55.16 |
| CDY62159 | Canola | cytosol | 53.02 | 54.91 |
| CDY32048 | Canola | nucleus | 53.02 | 54.67 |
| Bra034515.1-P | Field mustard | nucleus | 53.02 | 54.67 |
| CDY19551 | Canola | cytosol | 52.59 | 54.46 |
| Bra027043.1-P | Field mustard | cytosol | 52.59 | 54.46 |
| CDY08673 | Canola | cytosol | 52.59 | 54.46 |
| CDY12949 | Canola | cytosol | 52.59 | 54.46 |
| Solyc04g014760.2.1 | Tomato | nucleus | 56.9 | 54.32 |
| KRH51157 | Soybean | cytosol | 58.19 | 54.22 |
| PGSC0003DMT400060556 | Potato | cytosol | 56.47 | 53.91 |
| KRH11529 | Soybean | nucleus | 58.62 | 53.33 |
| KRH01997 | Soybean | cytosol | 56.9 | 53.01 |
| Solyc11g012270.1.1 | Tomato | cytosol | 55.6 | 49.62 |
| PGSC0003DMT400034743 | Potato | cytosol | 54.31 | 48.46 |
| Os02t0719000-01 | Rice | cytosol | 71.98 | 44.3 |
| Zm00001d010397_P002 | Maize | cytosol | 25.0 | 34.32 |
Protein Annotations
| EntrezGene:103654010 | Gene3D:2.70.50.30 | MapMan:27.4.4 | ProteinID:AQK54977.1 | ProteinID:AQK54978.1 | GO:GO:0003674 |
| GO:GO:0005094 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0008150 |
| GO:GO:0030234 | GO:GO:0050790 | InterPro:IPR024792 | InterPro:Ig_E-set | UniProt:K7U856 | PFAM:PF02115 |
| PRINTS:PR00492 | PANTHER:PTHR10980 | PANTHER:PTHR10980:SF30 | InterPro:RhoGDI_dom_sf | InterPro:Rho_GDI | SUPFAM:SSF81296 |
| UniParc:UPI000220C23B | EnsemblPlantsGene:Zm00001d051687 | EnsemblPlants:Zm00001d051687_P001 | EnsemblPlants:Zm00001d051687_T001 | SEG:seg | : |
Description
Rho GDP-dissociation inhibitor 1
Coordinates
chr4:+:166717204..166719694
Molecular Weight (calculated)
25679.0 Da
IEP (calculated)
4.411
GRAVY (calculated)
-0.549
Length
232 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSAVEPVSC SKVDVPAAGP DPEDAAAPAG HGEAAPCCHE EEEEEEEEKA PQAIDLGPMV SIKEQLEKDK DDESLRRWKE QLLGGVDLNS VGETLEPDVR
101: ITSLSILSPG RRDIVLPLPV DATKGVWFTL KEGSPYRLKF TFSVSSNIVS GLRYTNTVWK TGLKVDRAKE MLGTFSPQPE PYTYVTPEDT TPSGMFARGS
201: YSARTKFLDD DRKCYLEINY AFDIRREWPS AS
101: ITSLSILSPG RRDIVLPLPV DATKGVWFTL KEGSPYRLKF TFSVSSNIVS GLRYTNTVWK TGLKVDRAKE MLGTFSPQPE PYTYVTPEDT TPSGMFARGS
201: YSARTKFLDD DRKCYLEINY AFDIRREWPS AS
001: MSLVSGARDM GFDDNNNNKN NKDGDDENSS SRTRADDDAL SRQMSESSLC ATEEEEDDDS KLQLGPQYTI KEHLEKDKDD ESLRKWKEQL LGSVDVTNIG
101: ETLDPEVRID SLAIISPGRP DIVLLVPENG NPKGMWFTLK EGSKYNLKFT FHVNNNIVSG LRYTNTVWKT GVKVDRAKEM LGTFSPQLEP YNHVMPEETT
201: PSGMFARGSY SARTKFLDDD NKCYLEINYS FDIRKEWPAL
101: ETLDPEVRID SLAIISPGRP DIVLLVPENG NPKGMWFTLK EGSKYNLKFT FHVNNNIVSG LRYTNTVWKT GVKVDRAKEM LGTFSPQLEP YNHVMPEETT
201: PSGMFARGSY SARTKFLDDD NKCYLEINYS FDIRKEWPAL
Arabidopsis Description
GDI1Putative RHO GDP-dissociation inhibitor 1 [Source:UniProtKB/TrEMBL;Acc:Q541X0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.