Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY35970 | Canola | cytosol | 88.26 | 87.9 |
| AT3G07880.1 | Thale cress | cytosol | 79.76 | 82.08 |
| CDY31238 | Canola | cytosol | 32.79 | 76.42 |
| CDY39796 | Canola | cytosol | 57.09 | 64.38 |
| CDY03276 | Canola | cytosol | 56.68 | 63.93 |
| CDY32048 | Canola | nucleus | 57.89 | 63.56 |
| PGSC0003DMT400021800 | Potato | cytosol | 59.92 | 63.52 |
| Solyc05g054110.2.1 | Tomato | cytosol | 59.92 | 63.52 |
| VIT_00s0187g00210.t01 | Wine grape | cytosol | 59.51 | 63.36 |
| Solyc04g014760.2.1 | Tomato | nucleus | 61.94 | 62.96 |
| CDY19551 | Canola | cytosol | 57.09 | 62.95 |
| CDY08673 | Canola | cytosol | 57.09 | 62.95 |
| CDY21031 | Canola | cytosol | 56.68 | 62.78 |
| CDY12949 | Canola | cytosol | 56.68 | 62.5 |
| CDY15966 | Canola | cytosol | 56.68 | 62.5 |
| CDY26538 | Canola | cytosol | 56.68 | 62.5 |
| PGSC0003DMT400060556 | Potato | cytosol | 61.13 | 62.14 |
| KRH36543 | Soybean | cytosol | 61.94 | 61.69 |
| GSMUA_Achr9P12630_001 | Banana | cytosol | 59.11 | 61.34 |
| CDY62159 | Canola | cytosol | 55.47 | 61.16 |
| CDY53349 | Canola | cytosol | 55.47 | 61.16 |
| KRH11529 | Soybean | nucleus | 62.75 | 60.78 |
| KRH51157 | Soybean | cytosol | 60.73 | 60.24 |
| KRH01997 | Soybean | cytosol | 60.73 | 60.24 |
| Zm00001d051687_P001 | Maize | cytosol | 55.47 | 59.05 |
| Zm00001d017859_P002 | Maize | cytosol | 58.7 | 58.7 |
| Solyc11g012270.1.1 | Tomato | cytosol | 60.32 | 57.31 |
| GSMUA_Achr5P04110_001 | Banana | cytosol | 60.73 | 56.82 |
| GSMUA_Achr7P20430_001 | Banana | cytosol | 59.92 | 56.49 |
| PGSC0003DMT400034743 | Potato | cytosol | 59.11 | 56.15 |
| OQU85511 | Sorghum | mitochondrion | 47.37 | 54.93 |
| TraesCS6B01G310800.1 | Wheat | cytosol | 56.68 | 54.47 |
| TraesCS6A01G282400.1 | Wheat | cytosol | 57.09 | 54.02 |
| TraesCS6D01G262900.1 | Wheat | cytosol | 56.68 | 53.64 |
| Os06t0318300-02 | Rice | cytosol | 53.85 | 49.26 |
| KXG19891 | Sorghum | cytosol | 54.25 | 47.35 |
| Os02t0719000-01 | Rice | cytosol | 59.51 | 38.99 |
Protein Annotations
| Gene3D:2.70.50.30 | MapMan:27.4.4 | GO:A0A078GSB0 | UniProt:A0A078GSB0 | EnsemblPlants:CDY28012 | ProteinID:CDY28012 |
| ProteinID:CDY28012.1 | GO:GO:0003674 | GO:GO:0005094 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0008150 | GO:GO:0030234 | GO:GO:0050790 | EnsemblPlantsGene:GSBRNA2T00038939001 | InterPro:IPR024792 |
| InterPro:Ig_E-set | PFAM:PF02115 | PRINTS:PR00492 | PANTHER:PTHR10980 | PANTHER:PTHR10980:SF30 | InterPro:RhoGDI_dom_sf |
| InterPro:Rho_GDI | SUPFAM:SSF81296 | UniParc:UPI0004EE50CD | SEG:seg | : | : |
Description
BnaC05g44140DBnaC05g44140D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GSB0]
Coordinates
chrLK032213:-:206590..208371
Molecular Weight (calculated)
27505.0 Da
IEP (calculated)
4.642
GRAVY (calculated)
-0.777
Length
247 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGAVSGSRD MGFVDNNNKK DGDDGNTSKT ASSHQHEGTD DEGAGSLGRQ MSEASLSAAE EEEEDDSKLQ LGPQYTIKEH LEKDKDDESL RKWKEQLLGS
101: VDVTNIGETL DPEVKIISLA ILSPGRPDIV LMVPENGNPK GMWFTLKEGS KYCLKFTFQV KNNIVSGLRY TNTVWKTGVK VDRGKEMLGT FSPQSEPYNH
201: VMPEETTPSG MFARGSYSAR TKFLDDDNKC YLEINYSFDI RKEWPAV
101: VDVTNIGETL DPEVKIISLA ILSPGRPDIV LMVPENGNPK GMWFTLKEGS KYCLKFTFQV KNNIVSGLRY TNTVWKTGVK VDRGKEMLGT FSPQSEPYNH
201: VMPEETTPSG MFARGSYSAR TKFLDDDNKC YLEINYSFDI RKEWPAV
001: MSLVSGARDM GFDDNNNNKN NKDGDDENSS SRTRADDDAL SRQMSESSLC ATEEEEDDDS KLQLGPQYTI KEHLEKDKDD ESLRKWKEQL LGSVDVTNIG
101: ETLDPEVRID SLAIISPGRP DIVLLVPENG NPKGMWFTLK EGSKYNLKFT FHVNNNIVSG LRYTNTVWKT GVKVDRAKEM LGTFSPQLEP YNHVMPEETT
201: PSGMFARGSY SARTKFLDDD NKCYLEINYS FDIRKEWPAL
101: ETLDPEVRID SLAIISPGRP DIVLLVPENG NPKGMWFTLK EGSKYNLKFT FHVNNNIVSG LRYTNTVWKT GVKVDRAKEM LGTFSPQLEP YNHVMPEETT
201: PSGMFARGSY SARTKFLDDD NKCYLEINYS FDIRKEWPAL
Arabidopsis Description
GDI1Putative RHO GDP-dissociation inhibitor 1 [Source:UniProtKB/TrEMBL;Acc:Q541X0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.