Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G75840.1 | CDY28012 | AT3G07880.1 | 10798620 |
| AT1G75840.1 | CDY35970 | AT3G07880.1 | 10798620 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra003739.1-P | Field mustard | cytosol | 100.0 | 100.0 |
| CDX68116 | Canola | cytosol | 100.0 | 100.0 |
| CDY39066 | Canola | cytosol | 97.44 | 96.94 |
| AT1G75840.1 | Thale cress | cytosol | 97.44 | 96.94 |
| CDY13528 | Canola | cytosol | 97.44 | 96.94 |
| CDY62937 | Canola | cytosol | 96.92 | 96.43 |
| CDY54338 | Canola | cytosol | 96.92 | 95.94 |
| CDY43414 | Canola | cytosol | 96.41 | 95.43 |
| CDX73206 | Canola | cytosol | 95.38 | 94.9 |
| CDX87656 | Canola | cytosol | 94.87 | 94.39 |
| VIT_18s0001g14670.t01 | Wine grape | cytosol | 93.33 | 92.39 |
| KRH51687 | Soybean | cytosol, nucleus, plastid | 92.82 | 91.88 |
| CDY57592 | Canola | cytosol | 95.38 | 91.18 |
| KRH61026 | Soybean | cytosol, nucleus, plastid | 91.79 | 90.86 |
| KRH61024 | Soybean | cytosol | 91.28 | 90.82 |
| TraesCS6D01G068500.2 | Wheat | cytosol | 89.74 | 88.83 |
| TraesCS6B01G094700.2 | Wheat | cytosol | 89.74 | 88.83 |
| TraesCS6A01G070700.2 | Wheat | cytosol | 89.74 | 88.83 |
| CDY71157 | Canola | cytosol | 76.92 | 88.76 |
| CDX75480 | Canola | cytosol | 89.74 | 88.38 |
| Zm00001d015036_P005 | Maize | cytosol | 89.23 | 88.32 |
| Os02t0120800-01 | Rice | plasma membrane | 89.23 | 88.32 |
| EES06186 | Sorghum | cytosol | 89.23 | 88.32 |
| CDY33284 | Canola | cytosol, plastid | 88.72 | 87.82 |
| CDY26832 | Canola | cytosol | 88.21 | 87.31 |
| CDY07816 | Canola | cytosol | 84.1 | 87.23 |
| CDY29012 | Canola | cytosol, plastid | 87.18 | 86.29 |
| CDY59617 | Canola | cytosol, plastid | 87.18 | 86.29 |
| CDX77994 | Canola | cytosol, plastid | 87.18 | 86.29 |
| CDX73732 | Canola | cytosol, plastid | 87.18 | 86.29 |
| CDY59407 | Canola | cytosol, plastid | 77.44 | 86.29 |
| CDX71303 | Canola | cytosol | 78.97 | 86.03 |
| CDX90652 | Canola | cytosol, plastid | 86.67 | 85.79 |
| CDY30344 | Canola | cytosol | 86.67 | 85.79 |
| CDY31409 | Canola | cytosol | 78.46 | 85.47 |
| CDY20828 | Canola | cytosol | 85.64 | 84.77 |
| CDY24378 | Canola | cytosol | 84.1 | 84.1 |
| CDY29201 | Canola | cytosol | 84.1 | 82.41 |
| CDX69104 | Canola | cytosol | 87.69 | 81.04 |
| CDY57346 | Canola | cytosol | 82.05 | 79.6 |
| CDY58056 | Canola | cytosol | 82.05 | 79.6 |
| CDY69676 | Canola | cytosol | 35.9 | 79.55 |
| CDX77623 | Canola | cytosol | 81.54 | 79.1 |
| CDY67441 | Canola | cytosol | 80.51 | 78.5 |
| CDY71169 | Canola | plastid | 81.54 | 75.36 |
| CDY02239 | Canola | cytosol | 60.0 | 75.0 |
| CDY48250 | Canola | plastid | 81.54 | 74.65 |
| CDY06854 | Canola | cytosol | 78.46 | 73.21 |
| CDY35236 | Canola | cytosol | 77.95 | 72.73 |
| CDY00332 | Canola | cytosol | 78.97 | 71.63 |
| Zm00001d053899_P001 | Maize | cytosol | 85.13 | 71.55 |
| CDY45748 | Canola | cytosol | 77.95 | 71.36 |
| CDX89745 | Canola | cytosol | 70.26 | 71.35 |
| CDY56740 | Canola | cytosol | 78.97 | 71.3 |
| CDY30738 | Canola | cytosol | 78.46 | 71.16 |
| CDY02240 | Canola | cytosol | 69.23 | 71.05 |
| CDY68200 | Canola | cytosol | 64.1 | 69.06 |
| CDX89746 | Canola | cytosol | 73.85 | 64.86 |
| HORVU6Hr1G012690.3 | Barley | plastid | 90.26 | 62.19 |
Protein Annotations
| MapMan:27.4.1 | Gene3D:3.40.50.300 | GO:A0A078D9K1 | EnsemblPlants:CDX85925 | ProteinID:CDX85925 | ProteinID:CDX85925.1 |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003924 | GO:GO:0005488 | GO:GO:0005525 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0007264 |
| GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016787 | EnsemblPlantsGene:GSBRNA2T00143758001 | InterPro:IPR003578 | InterPro:P-loop_NTPase |
| PFAM:PF00071 | PRINTS:PR00449 | PFscan:PS51420 | PANTHER:PTHR24072 | PANTHER:PTHR24072:SF249 | SMART:SM00173 |
| SMART:SM00174 | SMART:SM00175 | SUPFAM:SSF52540 | InterPro:Small_GTP-bd_dom | InterPro:Small_GTPase | InterPro:Small_GTPase_Rho |
| TIGRFAMs:TIGR00231 | UniParc:UPI00004E2A1B | SEG:seg | : | : | : |
Description
BnaC06g22090D
Coordinates
chrLK031843:+:862727..864319
Molecular Weight (calculated)
21523.0 Da
IEP (calculated)
9.528
GRAVY (calculated)
-0.122
Length
195 amino acids
Sequence
(BLAST)
(BLAST)
001: MSASRFIKCV TVGDGAVGKT CMLISYTSNT FPTDYVPTVF DNFSANVVVD GNTVNLGLWD TAGQEDYNRL RPLSYRGADV FILAFSLISK ASYENIAKKW
101: IPELRHYAPG VPIILVGTKL DLRDDKQFFI DHPGAVPIST NQGEELKKLI GSPAYIECSS KTQQNVKAVF DAAIKVVLQP PKQKKKKKKN GCVFL
101: IPELRHYAPG VPIILVGTKL DLRDDKQFFI DHPGAVPIST NQGEELKKLI GSPAYIECSS KTQQNVKAVF DAAIKVVLQP PKQKKKKKKN GCVFL
001: MASRFIKCVT VGDGAVGKTC MLISYTSNTF PTDYVPTVFD NFSANVVVDG NTVNLGLWDT AGQEDYNRLR PLSYRGADVF ILAFSLISKA SYENIAKKWI
101: PELRHYAPGV PIILVGTKLD LRDDKQFFID HPGAVPITTN QGEELKKLIG SAVYIECSSK TQQNVKAVFD AAIKVVLQPP KQKKKKKNKN RCAFL
101: PELRHYAPGV PIILVGTKLD LRDDKQFFID HPGAVPITTN QGEELKKLIG SAVYIECSSK TQQNVKAVFD AAIKVVLQPP KQKKKKKNKN RCAFL
Arabidopsis Description
ARAC4RAC-like GTP-binding protein ARAC4 [Source:UniProtKB/TrEMBL;Acc:Q0WU07]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.