Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 4
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G45970.1 | CDX91460 | AT2G38440.1 | 17267444 |
| AT5G45970.1 | CDY69042 | AT2G38440.1 | 17267444 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra025045.1-P | Field mustard | cytosol | 100.0 | 100.0 |
| CDX77623 | Canola | cytosol | 99.5 | 99.5 |
| AT5G45970.1 | Thale cress | cytosol | 98.01 | 98.01 |
| CDY57346 | Canola | cytosol | 97.01 | 97.01 |
| CDY67441 | Canola | cytosol | 95.52 | 96.0 |
| KRH50139 | Soybean | cytosol, nucleus, plastid | 85.57 | 87.76 |
| Solyc02g077400.2.1 | Tomato | cytosol, plastid | 85.57 | 87.31 |
| PGSC0003DMT400027852 | Potato | cytosol | 85.57 | 87.31 |
| GSMUA_Achr10P... | Banana | cytosol | 84.08 | 86.22 |
| Os02t0312600-01 | Rice | cytosol | 83.58 | 85.28 |
| CDY54338 | Canola | cytosol | 81.09 | 82.74 |
| CDY43414 | Canola | cytosol | 81.09 | 82.74 |
| CDY39066 | Canola | cytosol | 80.6 | 82.65 |
| CDY62937 | Canola | cytosol | 80.6 | 82.65 |
| CDY13528 | Canola | cytosol | 80.6 | 82.65 |
| GSMUA_Achr6P13740_001 | Banana | cytosol | 80.1 | 82.14 |
| CDX68116 | Canola | cytosol | 79.6 | 82.05 |
| CDX85925 | Canola | cytosol | 79.6 | 82.05 |
| CDX87656 | Canola | cytosol | 79.6 | 81.63 |
| CDX73206 | Canola | cytosol | 79.1 | 81.12 |
| CDY71157 | Canola | cytosol | 68.16 | 81.07 |
| CDY07816 | Canola | cytosol | 75.62 | 80.85 |
| CDY26832 | Canola | cytosol | 79.1 | 80.71 |
| CDX73732 | Canola | cytosol, plastid | 78.61 | 80.2 |
| CDY29012 | Canola | cytosol, plastid | 78.61 | 80.2 |
| CDX90652 | Canola | cytosol, plastid | 78.61 | 80.2 |
| CDY59617 | Canola | cytosol, plastid | 78.61 | 80.2 |
| CDX77994 | Canola | cytosol, plastid | 78.61 | 80.2 |
| KRH20356 | Soybean | cytosol | 84.58 | 79.81 |
| CDY30344 | Canola | cytosol | 78.11 | 79.7 |
| CDY59407 | Canola | cytosol, plastid | 69.15 | 79.43 |
| CDY20828 | Canola | cytosol | 77.61 | 79.19 |
| CDY33284 | Canola | cytosol, plastid | 77.61 | 79.19 |
| CDY57592 | Canola | cytosol | 80.1 | 78.92 |
| CDX75480 | Canola | cytosol | 77.61 | 78.79 |
| CDY24378 | Canola | cytosol | 76.12 | 78.46 |
| VIT_10s0003g00570.t01 | Wine grape | cytosol | 66.17 | 77.78 |
| CDY29201 | Canola | cytosol | 76.62 | 77.39 |
| CDY31409 | Canola | cytosol | 68.16 | 76.54 |
| CDX71303 | Canola | cytosol | 67.66 | 75.98 |
| CDX69104 | Canola | cytosol | 76.62 | 72.99 |
| CDY69676 | Canola | cytosol | 31.34 | 71.59 |
| CDY71169 | Canola | plastid | 75.12 | 71.56 |
| CDY35236 | Canola | cytosol | 74.13 | 71.29 |
| CDY06854 | Canola | cytosol | 74.13 | 71.29 |
| CDY48250 | Canola | plastid | 75.12 | 70.89 |
| CDY56740 | Canola | cytosol | 73.13 | 68.06 |
| CDY02239 | Canola | cytosol | 52.74 | 67.95 |
| CDY45748 | Canola | cytosol | 71.64 | 67.61 |
| CDY30738 | Canola | cytosol | 72.14 | 67.44 |
| CDY00332 | Canola | cytosol | 71.64 | 66.98 |
| CDY68200 | Canola | cytosol | 59.7 | 66.3 |
| CDX89745 | Canola | cytosol | 63.18 | 66.15 |
| CDY02240 | Canola | cytosol | 62.19 | 65.79 |
| CDX89746 | Canola | cytosol | 65.17 | 59.01 |
Protein Annotations
| MapMan:27.4.1 | Gene3D:3.40.50.300 | GO:A0A078J5B5 | UniProt:A0A078J5B5 | EnsemblPlants:CDY58056 | ProteinID:CDY58056 |
| ProteinID:CDY58056.1 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003924 | GO:GO:0005488 |
| GO:GO:0005525 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0007154 | GO:GO:0007165 |
| GO:GO:0007264 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016787 | EnsemblPlantsGene:GSBRNA2T00023044001 |
| InterPro:IPR003578 | InterPro:P-loop_NTPase | PFAM:PF00071 | PRINTS:PR00449 | PFscan:PS51420 | PANTHER:PTHR24072 |
| PANTHER:PTHR24072:SF178 | SMART:SM00173 | SMART:SM00174 | SMART:SM00175 | SUPFAM:SSF52540 | InterPro:Small_GTP-bd_dom |
| InterPro:Small_GTPase | InterPro:Small_GTPase_Rho | TIGRFAMs:TIGR00231 | UniParc:UPI000253FBEA | SEG:seg | : |
Description
BnaA06g40250DBnaA06g40250D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J5B5]
Coordinates
chrLK033631:+:32822..34707
Molecular Weight (calculated)
22468.3 Da
IEP (calculated)
10.093
GRAVY (calculated)
-0.177
Length
201 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTARFIKCV TVGDGAVGKT CMLISYTSNT FPTDYVPTVF DNFSANVVVD GSTVNLGLWD TAGQEDYNRL RPLSYRGADV FLLAFSLISK ASYENIYKKW
101: LPELKHYAPT IPIVLVGTKL DLRDDKQFLK DHPGAASITT AQGEELRKMI GAVRYLECSS KTQQNVKSVF DTAIRVALRP PKAKKKIKPL KTKRSRTCFF
201: L
101: LPELKHYAPT IPIVLVGTKL DLRDDKQFLK DHPGAASITT AQGEELRKMI GAVRYLECSS KTQQNVKSVF DTAIRVALRP PKAKKKIKPL KTKRSRTCFF
201: L
001: MSTARFIKCV TVGDGAVGKT CMLISYTSNT FPTDYVPTVF DNFSANVVVD GSTVNLGLWD TAGQEDYNRL RPLSYRGADV FLLAFSLISK ASYENIHKKW
101: LPELKHYAPG IPIVLVGTKL DLRDDKQFLK DHPGAASITT AQGEELRKMI GAVRYLECSS KTQQNVKAVF DTAIRVALRP PKAKKKIKPL KTKRSRICFF
201: L
101: LPELKHYAPG IPIVLVGTKL DLRDDKQFLK DHPGAASITT AQGEELRKMI GAVRYLECSS KTQQNVKAVF DTAIRVALRP PKAKKKIKPL KTKRSRICFF
201: L
Arabidopsis Description
ARAC2ROP7 [Source:UniProtKB/TrEMBL;Acc:A0A178UDV3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.