Factsheet for PGSC0003DMT400027852

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus, plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g077400.2.1	Tomato	cytosol, plastid	100.0	100.0
Os02t0312600-01	Rice	cytosol	87.31	87.31
GSMUA_Achr10P...	Banana	cytosol	86.8	87.24
KRH50139	Soybean	cytosol, nucleus, plastid	86.29	86.73
PGSC0003DMT400031185	Potato	cytosol	45.69	86.54
Bra025045.1-P	Field mustard	cytosol	87.31	85.57
CDY58056	Canola	cytosol	87.31	85.57
AT5G45970.1	Thale cress	cytosol	86.8	85.07
CDX77623	Canola	cytosol	86.8	85.07
GSMUA_Achr6P13740_001	Banana	cytosol	84.26	84.69
CDY57346	Canola	cytosol	86.29	84.58
Bra022004.1-P	Field mustard	cytosol	85.28	83.58
CDY67441	Canola	cytosol	84.77	83.5
PGSC0003DMT400009227	Potato	cytosol	83.25	83.25
PGSC0003DMT400015836	Potato	cytosol, nucleus, plastid	83.25	82.83
PGSC0003DMT400058108	Potato	cytosol	81.73	81.73
PGSC0003DMT400061371	Potato	cytosol	81.22	81.22
VIT_10s0003g00570.t01	Wine grape	cytosol	69.04	79.53
KRH20356	Soybean	cytosol	85.28	78.87
PGSC0003DMT400004254	Potato	cytosol	80.2	75.96
PGSC0003DMT400063229	Potato	cytosol	78.17	73.33
PGSC0003DMT400031188	Potato	cytosol	29.95	71.95
PGSC0003DMT400022302	Potato	cytosol	75.63	70.95
PGSC0003DMT400063227	Potato	cytosol	57.36	70.62
PGSC0003DMT400000816	Potato	cytosol	73.6	68.72

Protein Annotations

EntrezGene:102580734	MapMan:27.4.1	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005886	GO:GO:0007154	GO:GO:0007165	GO:GO:0007264	GO:GO:0008150	GO:GO:0009987
GO:GO:0016020	GO:GO:0016787	InterPro:IPR003578	UniProt:M1AQ97	InterPro:P-loop_NTPase	PFAM:PF00071
EnsemblPlantsGene:PGSC0003DMG400010726	PGSC:PGSC0003DMG400010726	EnsemblPlants:PGSC0003DMT400027852	PRINTS:PR00449	PFscan:PS51420	PANTHER:PTHR24072
PANTHER:PTHR24072:SF178	SMART:SM00173	SMART:SM00174	SMART:SM00175	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom
InterPro:Small_GTPase	InterPro:Small_GTPase_Rho	TIGRFAMs:TIGR00231	UniParc:UPI0002767B29	RefSeq:XP_006367198.1	SEG:seg

Description

Rac-like GTP-binding protein RAC13 [Source:PGSC_GENE;Acc:PGSC0003DMG400010726]

Coordinates

chr2:-:32869023..32871514

Molecular Weight (calculated)

21947.6 Da

IEP (calculated)

9.638

GRAVY (calculated)

-0.149

Length

197 amino acids

Sequence
(BLAST)

001: MTTARFIKCV TVGDGAVGKT CMLISYTSNT FPTDYVPTVF DNFSANVVVD GSTVNLGLWD TAGQEDYNRL RPLSYRGADV FLLAFSLISK ASYENIYKKW
101: IPELRHYAPT IQIVLVGTKL DLREDKQYLS DHPGATPIST AQGEELKKMI GAVAYIECSS KTQQNVKAVF DTAIKVALRP PKMKKRPQKR RTLCAIL

Best Arabidopsis Sequence Match ( AT5G45970.1 )
(BLAST)

001: MSTARFIKCV TVGDGAVGKT CMLISYTSNT FPTDYVPTVF DNFSANVVVD GSTVNLGLWD TAGQEDYNRL RPLSYRGADV FLLAFSLISK ASYENIHKKW
101: LPELKHYAPG IPIVLVGTKL DLRDDKQFLK DHPGAASITT AQGEELRKMI GAVRYLECSS KTQQNVKAVF DTAIRVALRP PKAKKKIKPL KTKRSRICFF
201: L

Arabidopsis Description

ARAC2ROP7 [Source:UniProtKB/TrEMBL;Acc:A0A178UDV3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.