Factsheet for PGSC0003DMT400000816

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus, plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g007210.1.1	Tomato	cytosol	96.21	96.21
PGSC0003DMT400022302	Potato	cytosol	89.57	90.0
VIT_11s0016g03640.t01	Wine grape	cytosol, nucleus, plasma membrane	89.1	89.52
KRH39320	Soybean	cytosol	86.73	86.32
KRH48356	Soybean	cytosol	85.78	86.19
AT4G28950.1	Thale cress	cytosol	85.31	86.12
GSMUA_Achr6P26750_001	Banana	cytosol	85.31	85.71
Bra011072.1-P	Field mustard	cytosol	84.83	85.65
CDY06854	Canola	cytosol	84.83	85.65
CDY35236	Canola	cytosol	84.83	85.65
TraesCS1D01G336200.1	Wheat	cytosol	84.83	84.43
TraesCS1B01G347000.1	Wheat	cytosol	84.83	84.43
TraesCS1A01G333600.1	Wheat	cytosol	84.83	84.43
GSMUA_Achr9P06320_001	Banana	cytosol	83.41	83.81
EES18497	Sorghum	cytosol	83.41	83.02
Zm00001d010732_P002	Maize	plasma membrane	82.46	82.08
HORVU1Hr1G076880.4	Barley	cytosol	84.36	81.65
Os05t0513800-01	Rice	plasma membrane	82.46	81.31
GSMUA_Achr8P27380_001	Banana	cytosol	80.09	80.86
Zm00001d038688_P002	Maize	cytosol	82.94	80.65
PGSC0003DMT400031185	Potato	cytosol	38.39	77.88
EES19253	Sorghum	cytosol	78.67	76.85
Os01t0229400-02	Rice	endoplasmic reticulum, plasma membrane	77.25	76.17
PGSC0003DMT400058108	Potato	cytosol	71.09	76.14
PGSC0003DMT400009227	Potato	cytosol	71.09	76.14
PGSC0003DMT400015836	Potato	cytosol, nucleus, plastid	70.14	74.75
PGSC0003DMT400061371	Potato	cytosol	69.67	74.62
PGSC0003DMT400027852	Potato	cytosol	68.72	73.6
TraesCS3D01G161900.1	Wheat	cytosol	74.88	72.48
Os01t0540300-00	Rice	cytosol	30.33	71.91
TraesCS3A01G154600.1	Wheat	cytosol	74.88	71.82
TraesCS3B01G180900.1	Wheat	cytosol	74.88	71.17
PGSC0003DMT400063229	Potato	cytosol	70.62	70.95
Zm00001d037911_P008	Maize	cytosol	77.73	70.09
PGSC0003DMT400004254	Potato	cytosol	67.77	68.75
PGSC0003DMT400063227	Potato	cytosol	50.24	66.25
PGSC0003DMT400031188	Potato	cytosol	24.17	62.2
HORVU3Hr1G052560.3	Barley	cytosol	50.24	35.69

Protein Annotations

EntrezGene:102597002	MapMan:27.4.1	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0007154	GO:GO:0007165	GO:GO:0007264	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020
GO:GO:0016787	InterPro:IPR003578	UniProt:M0ZHD3	InterPro:P-loop_NTPase	PFAM:PF00071	EnsemblPlantsGene:PGSC0003DMG400000304
PGSC:PGSC0003DMG400000304	EnsemblPlants:PGSC0003DMT400000816	PRINTS:PR00449	PFscan:PS51420	PANTHER:PTHR24072	PANTHER:PTHR24072:SF127
SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom
InterPro:Small_GTPase	InterPro:Small_GTPase_Rho	TIGRFAMs:TIGR00231	UniParc:UPI0002963EC4	RefSeq:XP_006353468.1	RefSeq:XP_006353469.1

Description

ROP [Source:PGSC_GENE;Acc:PGSC0003DMG400000304]

Coordinates

chr12:+:4392343..4395468

Molecular Weight (calculated)

23283.2 Da

IEP (calculated)

8.740

GRAVY (calculated)

-0.068

Length

211 amino acids

Sequence
(BLAST)

001: MNVSKFIKCV TVGDGAVGKT CMLICYTSNR FPTDYIPTVF DNFSANVSMD GRIVNLGLWD TAGQEDYSRL RPLSYRCADV FVLAFSLISR ASYENVLKKW
101: MPELRRFAPD VPIVLVGTKL DLRDDNGHLA DHMGSNIITP AQGEELRKQI GAAAYVECSS KTQQNVKAVF DTAIKVVLQP PRRLEVSSKK RHRSTGCSIV
201: RGIVCGGCDA V

Best Arabidopsis Sequence Match ( AT4G28950.1 )
(BLAST)

001: MSASKFIKCV TVGDGAVGKT CMLICYTSNK FPTDYIPTVF DNFSANVAVD GQIVNLGLWD TAGQEDYSRL RPLSYRGADI FVLAFSLISK ASYENVLKKW
101: MPELRRFAPN VPIVLVGTKL DLRDDKGYLA DHTNVITSTQ GEELRKQIGA AAYIECSSKT QQNVKAVFDT AIKVVLQPPR RKEVPRRRKN HRRSGCSIAS
201: IVCGGCTAA

Arabidopsis Description

ARAC7Rac-like GTP-binding protein ARAC7 [Source:UniProtKB/Swiss-Prot;Acc:O82480]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.