Factsheet for PGSC0003DMT400015836

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	nucleus
Plant-mPloc:	cytosol, nucleus, plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g111560.2.1	Tomato	cytosol, nucleus, plastid	100.0	100.0
PGSC0003DMT400009227	Potato	cytosol	92.42	92.89
PGSC0003DMT400058108	Potato	cytosol	91.41	91.88
PGSC0003DMT400031185	Potato	cytosol	47.98	91.35
PGSC0003DMT400061371	Potato	cytosol	89.9	90.36
PGSC0003DMT400031188	Potato	cytosol	37.37	90.24
PGSC0003DMT400027852	Potato	cytosol	82.83	83.25
PGSC0003DMT400004254	Potato	cytosol	80.3	76.44
PGSC0003DMT400063229	Potato	cytosol	80.3	75.71
PGSC0003DMT400022302	Potato	cytosol	77.27	72.86
PGSC0003DMT400063227	Potato	cytosol	58.59	72.5
PGSC0003DMT400000816	Potato	cytosol	74.75	70.14

Protein Annotations

EntrezGene:102598995	MapMan:27.4.1	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0007154	GO:GO:0007165	GO:GO:0007264	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020
GO:GO:0016787	InterPro:IPR003578	UniProt:M1A6P2	InterPro:P-loop_NTPase	PFAM:PF00071	EnsemblPlantsGene:PGSC0003DMG400006189
PGSC:PGSC0003DMG400006189	EnsemblPlants:PGSC0003DMT400015836	PRINTS:PR00449	PFscan:PS51420	PANTHER:PTHR24072	PANTHER:PTHR24072:SF249
SMART:SM00173	SMART:SM00174	SMART:SM00175	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase
InterPro:Small_GTPase_Rho	TIGRFAMs:TIGR00231	UniParc:UPI000276770B	RefSeq:XP_006359696.1	SEG:seg	:

Description

Rac-like GTP-binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400006189]

Coordinates

chr1:+:87542094..87549232

Molecular Weight (calculated)

21718.2 Da

IEP (calculated)

9.822

GRAVY (calculated)

-0.121

Length

198 amino acids

Sequence
(BLAST)

001: MSASRFIKCV TVGDGAVGKT CLLISYTSNT FPTDYVPTVF DNFSANVVVD GSTVNLGLWD TAGQEDYNRL RPLSYRGADV FILAFSLISK ASYENVSKKW
101: IPELRHYAPG VPIILVGTKL DLREDKQFFV DHPGAVPLST AQGEELRKSI GAAAYIECSA KTQQNIKAVF DAAIKVVLQP PKQKKKKKRK GQKACSIL

Best Arabidopsis Sequence Match ( AT4G35020.3 )
(BLAST)

001: MSASRFIKCV TVGDGAVGKT CLLISYTSNT FPTDYVPTVF DNFSANVIVD GNTINLGLWD TAGQEDYNRL RPLSYRGADV FLLAFSLVSK ASYENVSKKW
101: VPELRHYAPG VPIILVGTKL DLRDDKQFFA EHPGAVPIST AQGEELKKLI GAPAYIECSA KTQQNVKAVF DAAIKVVLQP PKNKKKKKRK SQKGCSIL

Arabidopsis Description

ARAC3At4g35020 [Source:UniProtKB/TrEMBL;Acc:Q5PNX9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.