Factsheet for PGSC0003DMT400063227

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 2
plasma membrane 2
golgi 1
mitochondrion 2
cytosol 3
nucleus 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus, plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400010303
PGSC0003DMT400023896
PGSC0003DMT400047997
PGSC0003DMT400063187
PGSC0003DMT400065493
PGSC0003DMT400069203

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G48040.1	PGSC0003DMT400023896	AT1G22920.1	21798944
AT3G48040.1	PGSC0003DMT400069203	AT1G22920.1	21798944
AT3G48040.1	PGSC0003DMT400063187	AT3G48100.1	18642946
AT5G62880.1	PGSC0003DMT400023896	AT1G22920.1	21798944
AT5G62880.1	PGSC0003DMT400069203	AT1G22920.1	21798944
AT5G62880.1	PGSC0003DMT400010303	AT4G36910.1	21798944
AT5G62880.1	PGSC0003DMT400065493	AT4G36910.1	21798944
AT5G62880.1	PGSC0003DMT400047997	AT4G38430.1	22500990

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH54429	Soybean	cytosol	35.62	87.69
PGSC0003DMT400031185	Potato	cytosol	51.88	79.81
Solyc03g114070.2.1	Tomato	cytosol	83.75	63.81
PGSC0003DMT400063229	Potato	cytosol	83.75	63.81
Bra035878.1-P	Field mustard	cytosol	78.12	60.98
EES05544	Sorghum	cytosol	80.0	59.81
KRH57035	Soybean	cytosol	78.12	59.81
TraesCS6D01G288300.1	Wheat	cytosol	79.38	59.62
Os02t0742200-01	Rice	cytosol	79.38	59.35
TraesCS6A01G309000.2	Wheat	cytosol	78.75	59.15
Bra010128.1-P	Field mustard	cytosol	76.88	59.13
HORVU6Hr1G076210.5	Barley	cytosol	79.38	59.07
VIT_17s0000g07890.t01	Wine grape	cytosol	77.5	59.05
PGSC0003DMT400015836	Potato	cytosol, nucleus, plastid	72.5	58.59
PGSC0003DMT400058108	Potato	cytosol	71.88	58.38
PGSC0003DMT400061371	Potato	cytosol	71.88	58.38
PGSC0003DMT400009227	Potato	cytosol	71.88	58.38
AT3G48040.1	Thale cress	cytosol	75.62	58.17
EER88130	Sorghum	cytosol	78.12	58.14
Os06t0234200-03	Rice	cytosol	78.12	58.14
KRH63489	Soybean	cytosol	76.88	58.02
CDY56740	Canola	cytosol	78.12	57.87
TraesCS7D01G192400.1	Wheat	cytosol	76.88	57.75
TraesCS7B01G096200.1	Wheat	cytosol	76.88	57.75
TraesCS7A01G191400.1	Wheat	cytosol	76.88	57.75
AT5G62880.1	Thale cress	cytosol	77.5	57.67
CDY30738	Canola	cytosol	77.5	57.67
Bra029240.1-P	Field mustard	cytosol	77.5	57.67
PGSC0003DMT400027852	Potato	cytosol	70.62	57.36
CDY00332	Canola	cytosol	76.88	57.21
TraesCS6B01G338000.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	75.62	56.81
CDY45748	Canola	cytosol	75.0	56.34
PGSC0003DMT400022302	Potato	cytosol	68.12	51.9
PGSC0003DMT400004254	Potato	cytosol	66.88	51.44
CDY68200	Canola	cytosol	56.88	50.28
PGSC0003DMT400000816	Potato	cytosol	66.25	50.24
KRH03338	Soybean	cytosol, plastid	76.88	48.43
HORVU7Hr1G038980.5	Barley	cytosol	75.62	48.4
GSMUA_Achr6P36120_001	Banana	cytosol	78.12	44.96
Zm00001d052273_P004	Maize	plastid	60.62	44.7
KRH54430	Soybean	cytosol	40.0	43.84
Zm00001d044802_P001	Maize	cytosol	78.12	43.55
Zm00001d018004_P002	Maize	cytosol, peroxisome, plastid	80.62	25.49
PGSC0003DMT400031188	Potato	cytosol	8.12	15.85

Protein Annotations

MapMan:27.4.1	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0007154
GO:GO:0007165	GO:GO:0007264	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016787
InterPro:IPR003578	UniProt:M1CAA0	InterPro:P-loop_NTPase	PFAM:PF00071	EnsemblPlantsGene:PGSC0003DMG401024590	PGSC:PGSC0003DMG401024590
EnsemblPlants:PGSC0003DMT400063227	PRINTS:PR00449	PFscan:PS51420	PANTHER:PTHR24072	PANTHER:PTHR24072:SF149	SMART:SM00173
SMART:SM00174	SMART:SM00175	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	InterPro:Small_GTPase_Rho
TIGRFAMs:TIGR00231	UniParc:UPI000295B2F1	:	:	:	:

Description

Rac protein [Source:PGSC_GENE;Acc:PGSC0003DMG401024590]

Coordinates

chr3:-:53942117..53944321

Molecular Weight (calculated)

17530.0 Da

IEP (calculated)

8.874

GRAVY (calculated)

-0.066

Length

160 amino acids

Sequence
(BLAST)

001: MASSASRFIK CVTVGDGAVG KTCMLICYTS NKFPTDYVPT VFDNFSANVV VEGTTVNLGL WDTAGQEDYN RLRPLSYRGA DVFVLAFSLV SRASYENILK
101: KWIPELQHYA PGIPVVLAGT KLGGYGFEPW KQPLAEMQGK AAYNRPCSPT LHRTQRIAGA

Best Arabidopsis Sequence Match ( AT1G75840.1 )
(BLAST)

001: MSASRFIKCV TVGDGAVGKT CMLISYTSNT FPTDYVPTVF DNFSANVVVD GNTVNLGLWD TAGQEDYNRL RPLSYRGADV FILAFSLISK ASYENVAKKW
101: IPELRHYAPG VPIILVGTKL DLRDDKQFFI DHPGAVPITT NQGEELKKLI GSPIYIECSS KTQQNVKAVF DAAIKVVLQP PKQKKKKKNK NRCVFL

Arabidopsis Description

ARAC5Rac-like GTP-binding protein ARAC5 [Source:UniProtKB/Swiss-Prot;Acc:Q38937]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.