Factsheet for PGSC0003DMT400065493

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400009227
PGSC0003DMT400023896
PGSC0003DMT400058108
PGSC0003DMT400061371
PGSC0003DMT400063227
PGSC0003DMT400063229
PGSC0003DMT400069203

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36910.1	PGSC0003DMT400023896	AT1G22920.1	21798944
AT4G36910.1	PGSC0003DMT400069203	AT1G22920.1	21798944
AT4G36910.1	PGSC0003DMT400063227	AT3G48040.1	21798944
AT4G36910.1	PGSC0003DMT400063229	AT3G48040.1	21798944
AT4G36910.1	PGSC0003DMT400009227	AT4G35950.1	21798944
AT4G36910.1	PGSC0003DMT400058108	AT4G35950.1	21798944
AT4G36910.1	PGSC0003DMT400061371	AT4G35950.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g064950.2.1	Tomato	plastid	97.03	97.03
PGSC0003DMT400010303	Potato	plastid	77.97	78.63
GSMUA_Achr7P05420_001	Banana	cytosol	50.85	76.92
Bra011743.1-P	Field mustard	cytosol	16.53	72.22
CDX75630	Canola	cytosol	16.53	72.22
GSMUA_Achr1P26070_001	Banana	cytosol	47.88	71.52
AT4G36910.1	Thale cress	plastid	63.56	63.56
Bra017810.1-P	Field mustard	plastid	62.29	63.09
CDY62227	Canola	plastid	62.29	63.09
KRH28440	Soybean	plastid	60.59	62.72
KRH77032	Soybean	plastid	60.59	62.72
CDY29539	Canola	plastid	61.86	62.66
VIT_07s0031g00200.t01	Wine grape	plastid	63.98	61.38
GSMUA_Achr1P15910_001	Banana	plastid	59.32	61.14
TraesCS7D01G288400.1	Wheat	plastid	54.66	56.09
Os08t0313200-01	Rice	plasma membrane, plastid	55.51	55.74
TraesCS7A01G295300.1	Wheat	plastid	53.81	55.22
Zm00001d050130_P003	Maize	plastid	53.81	54.74
Os09t0115500-01	Rice	plastid	52.12	54.19
TraesCS5B01G159500.1	Wheat	plastid	53.39	53.85
TraesCS5D01G166900.1	Wheat	plastid	52.97	53.65
TraesCS5A01G162000.1	Wheat	plastid	52.97	52.97
KXG25872	Sorghum	plastid	49.15	50.88
PGSC0003DMT400066577	Potato	plastid	49.58	50.87
HORVU5Hr1G050570.1	Barley	plastid	56.36	49.26
Zm00001d004354_P001	Maize	plastid	49.15	45.85

Protein Annotations

EnsemblPlants:PGSC0003DMT400065493	EnsemblPlantsGene:PGSC0003DMG400025473	EntrezGene:102589492	Gene3D:3.10.580.10	InterPro:CBS_dom	InterPro:IPR000644
PANTHER:PTHR43803	PANTHER:PTHR43803:SF1	PFAM:PF00571	PFscan:PS51371	PGSC:PGSC0003DMG400025473	RefSeq:XP_006360213.1
SMART:SM00116	SUPFAM:SSF54631	UniParc:UPI000295C466	UniProt:M1CE34	MapMan:35.1	:

Description

CBS domain containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400025473]

Coordinates

chr2:-:23419179..23426233

Molecular Weight (calculated)

26019.6 Da

IEP (calculated)

9.749

GRAVY (calculated)

-0.050

Length

236 amino acids

Sequence
(BLAST)

001: MASISPSGLS LRRSSAAFHH QLPCLLLSLP FHKVATFAKC FLSVRLWNSR KHFSVTASNT LTANSIEPRN GVYTVGDFMT RKDELHVVKP STSVDEALEI
101: LVERRITGFP VVDDDWKLVG LVSDYDLLAL DSVSGTGGAD ANMFPEVGSN WKTFNEVQKL ISKTKGKVVG DLMTPAPLVV RESTNLEDAA RLLLKTKYRR
201: LPVVDSDGKL VGIITRGNVV RAALHIKRIM EMEGQQ

Best Arabidopsis Sequence Match ( AT4G36910.1 )
(BLAST)

001: MDAVLYSVPL SFTPLRASSS PSSPYLLLPR FLSVQPCHKF TFSRSFPSKS RIPSASSAAG STLMTNSSSP RSGVYTVGEF MTKKEDLHVV KPTTTVDEAL
101: ELLVENRITG FPVIDEDWKL VGLVSDYDLL ALDSISGSGR TENSMFPEVD STWKTFNAVQ KLLSKTNGKL VGDLMTPAPL VVEEKTNLED AAKILLETKY
201: RRLPVVDSDG KLVGIITRGN VVRAALQIKR SGDRNA

Arabidopsis Description

CBSX1CBS domain-containing protein CBSX1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O23193]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.