Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g107860.2.1 | Tomato | plastid | 92.17 | 87.6 |
| CDX69026 | Canola | plastid | 49.13 | 53.55 |
| AT4G34120.1 | Thale cress | plastid | 53.91 | 52.1 |
| KRH70676 | Soybean | plastid | 50.87 | 52.0 |
| KRH50338 | Soybean | plastid | 49.57 | 51.35 |
| CDX72451 | Canola | plastid | 50.87 | 51.32 |
| PGSC0003DMT400010303 | Potato | plastid | 52.17 | 51.28 |
| Bra034605.1-P | Field mustard | plastid | 51.74 | 51.07 |
| CDY49275 | Canola | plastid | 50.43 | 50.88 |
| CDY62720 | Canola | plastid | 50.43 | 50.66 |
| CDX75398 | Canola | plastid | 50.0 | 50.44 |
| CDY51959 | Canola | plastid | 50.87 | 50.0 |
| PGSC0003DMT400065493 | Potato | plastid | 50.87 | 49.58 |
| VIT_03s0063g00060.t01 | Wine grape | plastid | 49.13 | 49.13 |
| Bra011489.1-P | Field mustard | plastid | 49.57 | 48.72 |
| Bra017627.1-P | Field mustard | plastid | 51.74 | 42.5 |
Protein Annotations
| Gene3D:3.10.580.10 | MapMan:35.1 | InterPro:CBS_dom | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0008150 | GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009570 | GO:GO:0009987 |
| GO:GO:0019725 | GO:GO:0045454 | InterPro:IPR000644 | UniProt:M1CFT3 | PFAM:PF00571 | EnsemblPlantsGene:PGSC0003DMG400025879 |
| PGSC:PGSC0003DMG400025879 | EnsemblPlants:PGSC0003DMT400066577 | PFscan:PS51371 | PANTHER:PTHR43803 | PANTHER:PTHR43803:SF1 | SMART:SM00116 |
| SUPFAM:SSF54631 | UniParc:UPI0002963AA0 | SEG:seg | : | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400025879]
Coordinates
chr1:-:84219395..84227853
Molecular Weight (calculated)
24905.6 Da
IEP (calculated)
4.896
GRAVY (calculated)
-0.123
Length
230 amino acids
Sequence
(BLAST)
(BLAST)
001: MESVLNFNSI SPICVLNYRL FPATLSCSVR PLSGDPSVAK SRRCLSQQKL SRSLPPASLP STSANAAAST SNSQSPSDGH YSVGDFMTRK EDLHVVKTTT
101: KVGEALEMLV EKRVTGLPVV DDDWKLVGVV SDYDLLALDS ISGAGQADTN LFPDVDSTWK TFNEVQTLLS KTNGKVVGDV MTPTPLSVCE NTNLEDAARL
201: LLQTKYRRLP VVDVDGKLHV ISDEALFAEM
101: KVGEALEMLV EKRVTGLPVV DDDWKLVGVV SDYDLLALDS ISGAGQADTN LFPDVDSTWK TFNEVQTLLS KTNGKVVGDV MTPTPLSVCE NTNLEDAARL
201: LLQTKYRRLP VVDVDGKLHV ISDEALFAEM
001: MDAVLYSVPL SFTPLRASSS PSSPYLLLPR FLSVQPCHKF TFSRSFPSKS RIPSASSAAG STLMTNSSSP RSGVYTVGEF MTKKEDLHVV KPTTTVDEAL
101: ELLVENRITG FPVIDEDWKL VGLVSDYDLL ALDSISGSGR TENSMFPEVD STWKTFNAVQ KLLSKTNGKL VGDLMTPAPL VVEEKTNLED AAKILLETKY
201: RRLPVVDSDG KLVGIITRGN VVRAALQIKR SGDRNA
101: ELLVENRITG FPVIDEDWKL VGLVSDYDLL ALDSISGSGR TENSMFPEVD STWKTFNAVQ KLLSKTNGKL VGDLMTPAPL VVEEKTNLED AAKILLETKY
201: RRLPVVDSDG KLVGIITRGN VVRAALQIKR SGDRNA
Arabidopsis Description
CBSX1CBS domain-containing protein CBSX1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O23193]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.