CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX79923
CDY22534
CDY22789
CDY23835
CDY35405
CDY42508

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34120.1	CDY22789	AT1G50320.1	23220733
AT4G34120.1	CDY42508	AT1G50320.1	23220733
AT4G34120.1	CDX79923	AT2G41680.1	21798944
AT4G34120.1	CDY22534	AT2G41680.1	21798944
AT4G34120.1	CDY23835	AT2G41680.1	21798944
AT4G34120.1	CDY35405	AT2G41680.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75398	Canola	plastid	94.31	87.28
Bra011489.1-P	Field mustard	plastid	84.36	76.07
CDX72451	Canola	plastid	79.15	73.25
CDY49275	Canola	plastid	79.15	73.25
CDY62720	Canola	plastid	79.15	72.93
CDY51959	Canola	plastid	78.2	70.51
AT4G34120.1	Thale cress	plastid	79.15	70.17
KRH70676	Soybean	plastid	63.51	59.56
CDX75630	Canola	cytosol	15.17	59.26
KRH50338	Soybean	plastid	60.66	57.66
Solyc01g107860.2.1	Tomato	plastid	62.56	54.55
VIT_03s0063g00060.t01	Wine grape	plastid	57.35	52.61
PGSC0003DMT400066577	Potato	plastid	53.55	49.13
CDY29539	Canola	plastid	53.08	48.07
CDY62227	Canola	plastid	53.08	48.07

Protein Annotations

EnsemblPlants:CDX69026	EnsemblPlantsGene:GSBRNA2T00130781001	Gene3D:3.10.580.10	InterPro:CBS_dom	InterPro:IPR000644	PANTHER:PTHR43803
PANTHER:PTHR43803:SF1	PFAM:PF00571	PFscan:PS51371	ProteinID:CDX69026	ProteinID:CDX69026.1	SEG:seg
SMART:SM00116	SUPFAM:SSF54631	UniParc:UPI0004EE6301	MapMan:35.1	:	:

Description

BnaC01g04270D

Coordinates

chrLK031789:+:2518477..2520127

Molecular Weight (calculated)

22918.4 Da

IEP (calculated)

5.710

GRAVY (calculated)

-0.181

Length

211 amino acids

Sequence
(BLAST)

001: MSSITLPITR LPLLNPTSSS SFSLPPPPPL SNPPLSDVNN SVPVKNGGYT VGDFMTGRQH LHVVKPSTSV DDALELLVEK KVTGLPVIDD DWNLVGVVSD
101: YDLLALDSIS GRSSQNDTNM FPNVDSSWKT FNELQKLISK THGQVVGDFM TPSPLVVRGS TNLEDAARLL LETKFRRLPV VDSDGKLIGI LTRGNVVRAA
201: LQIKRETENS T

Best Arabidopsis Sequence Match ( AT4G34120.1 )
(BLAST)

001: MGSISLSNSM PITRLPLLTS LYHQSFLPIS SSSFSLLPLS NRRRSSTFSP SITVSAFFAA PASVNNNNSV PAKNGGYTVG DFMTPRQNLH VVKPSTSVDD
101: ALELLVEKKV TGLPVIDDNW TLVGVVSDYD LLALDSISGR SQNDTNLFPD VDSTWKTFNE LQKLISKTYG KVVGDLMTPS PLVVRDSTNL EDAARLLLET
201: KFRRLPVVDA DGKLIGILTR GNVVRAALQI KRETENST

Arabidopsis Description

CBSX2CBS domain-containing protein CBSX2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C5D0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.