Factsheet for Solyc01g107860.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g008250.2.1
Solyc04g016010.2.1
Solyc10g080080.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34120.1	Solyc01g008250.2.1	AT1G50320.1	23220733
AT4G34120.1	Solyc04g016010.2.1	AT2G41680.1	21798944
AT4G34120.1	Solyc10g080080.1.1	AT2G41680.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400066577	Potato	plastid	87.6	92.17
CDX69026	Canola	plastid	54.55	62.56
AT4G34120.1	Thale cress	plastid	59.5	60.5
CDX75398	Canola	plastid	55.79	59.21
Bra034605.1-P	Field mustard	plastid	56.61	58.8
CDY62720	Canola	plastid	55.37	58.52
KRH70676	Soybean	plastid	53.72	57.78
CDY51959	Canola	plastid	55.79	57.69
Bra011489.1-P	Field mustard	plastid	55.37	57.27
KRH50338	Soybean	plastid	52.07	56.76
CDX72451	Canola	plastid	51.65	54.82
Solyc02g093140.2.1	Tomato	plastid	52.89	54.7
CDY49275	Canola	plastid	51.24	54.39
VIT_03s0063g00060.t01	Wine grape	plastid	50.41	53.04
Solyc02g064950.2.1	Tomato	plastid	51.65	52.97
Bra017627.1-P	Field mustard	plastid	50.83	43.93

Protein Annotations

Gene3D:3.10.580.10	MapMan:35.1	InterPro:CBS_dom	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0008150	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009987
GO:GO:0019725	GO:GO:0045454	InterPro:IPR000644	UniProt:K4B302	PFAM:PF00571	PFscan:PS51371
PANTHER:PTHR43803	PANTHER:PTHR43803:SF1	SMART:SM00116	SUPFAM:SSF54631	EnsemblPlantsGene:Solyc01g107860.2	EnsemblPlants:Solyc01g107860.2.1
UniParc:UPI0002768047	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1:-:95250413..95257001

Molecular Weight (calculated)

26181.2 Da

IEP (calculated)

7.933

GRAVY (calculated)

-0.192

Length

242 amino acids

Sequence
(BLAST)

001: MESVLNFNSI SPICVLNYRL FPTTLSCSPR PLSGDPAVAT SRRCLSQRKL SRSLPPASLP STSANAAAST SNSQSPSDGH YSVGDFMTRK EDLHVVKTTT
101: KVGEALEMLV EKRVTGLPVV DDDWKLVGVV SDYDLLALDS ISGAGQADTN LFPDVDSTWK TFNEVQKLLS KTNGKVVGDV MTPSPLSVCE NTNLEDAARL
201: LLQTKYRRLP VVDVDGKLVG IITRGNVVRA ALQIKRTTDN TN

Best Arabidopsis Sequence Match ( AT4G36910.1 )
(BLAST)

001: MDAVLYSVPL SFTPLRASSS PSSPYLLLPR FLSVQPCHKF TFSRSFPSKS RIPSASSAAG STLMTNSSSP RSGVYTVGEF MTKKEDLHVV KPTTTVDEAL
101: ELLVENRITG FPVIDEDWKL VGLVSDYDLL ALDSISGSGR TENSMFPEVD STWKTFNAVQ KLLSKTNGKL VGDLMTPAPL VVEEKTNLED AAKILLETKY
201: RRLPVVDSDG KLVGIITRGN VVRAALQIKR SGDRNA

Arabidopsis Description

CBSX1CBS domain-containing protein CBSX1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O23193]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.