Factsheet for Solyc02g093140.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 1
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g062020.2.1
Solyc02g083580.2.1
Solyc03g033420.2.1
Solyc03g114070.2.1
Solyc06g073150.2.1
Solyc11g017300.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36910.1	Solyc06g073150.2.1	AT1G22920.1	21798944
AT4G36910.1	Solyc11g017300.1.1	AT1G22920.1	21798944
AT4G36910.1	Solyc03g114070.2.1	AT3G48040.1	21798944
AT4G36910.1	Solyc02g062020.2.1	AT4G35950.1	21798944
AT4G36910.1	Solyc02g083580.2.1	AT4G35950.1	21798944
AT4G36910.1	Solyc03g033420.2.1	AT4G35950.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400010303	Potato	plastid	97.01	97.01
Solyc02g064950.2.1	Tomato	plastid	78.63	77.97
GSMUA_Achr7P05420_001	Banana	cytosol	51.71	77.56
GSMUA_Achr1P26070_001	Banana	cytosol	50.0	74.05
Bra011743.1-P	Field mustard	cytosol	15.81	68.52
CDX75630	Canola	cytosol	15.81	68.52
GSMUA_Achr1P15910_001	Banana	plastid	62.82	64.19
KRH28440	Soybean	plastid	61.54	63.16
KRH77032	Soybean	plastid	61.11	62.72
VIT_07s0031g00200.t01	Wine grape	plastid	65.38	62.2
AT4G36910.1	Thale cress	plastid	61.54	61.02
Bra017810.1-P	Field mustard	plastid	60.26	60.52
CDY62227	Canola	plastid	60.26	60.52
CDY29539	Canola	plastid	59.83	60.09
Os08t0313200-01	Rice	plasma membrane, plastid	58.97	58.72
TraesCS7A01G295300.1	Wheat	plastid	56.84	57.83
TraesCS7D01G288400.1	Wheat	plastid	56.41	57.39
Zm00001d050130_P003	Maize	plastid	56.84	57.33
TraesCS5B01G159500.1	Wheat	plastid	56.41	56.41
Os09t0115500-01	Rice	plastid	54.27	55.95
TraesCS5A01G162000.1	Wheat	plastid	55.98	55.51
TraesCS5D01G166900.1	Wheat	plastid	55.13	55.36
Solyc01g107860.2.1	Tomato	plastid	54.7	52.89
KXG25872	Sorghum	plastid	48.72	50.0
HORVU5Hr1G050570.1	Barley	plastid	56.41	48.89
Zm00001d004354_P001	Maize	plastid	50.43	46.64

Protein Annotations

EnsemblPlants:Solyc02g093140.2.1	EnsemblPlantsGene:Solyc02g093140.2	Gene3D:3.10.580.10	InterPro:CBS_dom	InterPro:IPR000644	PANTHER:PTHR43803
PANTHER:PTHR43803:SF1	PFAM:PF00571	PFscan:PS51371	SEG:seg	SMART:SM00116	SUPFAM:SSF54631
UniParc:UPI0002768312	UniProt:K4BDB0	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr2:-:54056940..54062715

Molecular Weight (calculated)

25506.9 Da

IEP (calculated)

9.104

GRAVY (calculated)

-0.065

Length

234 amino acids

Sequence
(BLAST)

001: MASISPSGSC LHRTPAAFHR QLPCLLLSLP GHILAASTKF YLPLRLSDSR DTFRLASANT LTANSVPPRN GVYTVGDFMT RKEELHVVKP TTSVDEALEA
101: LVEHRITGFP VIDDNWKLVG LVSDYDLLAL DSVSGTGTAD AGIFPEVDSN WKTFNEVQKL LGKTKGKVVG DLMTPAPLVV RESTNLEDAA RLLLKTKYRR
201: LPVVDGKGKL VGIITRGNVV RAALQIKRAT EMED

Best Arabidopsis Sequence Match ( AT4G36910.1 )
(BLAST)

001: MDAVLYSVPL SFTPLRASSS PSSPYLLLPR FLSVQPCHKF TFSRSFPSKS RIPSASSAAG STLMTNSSSP RSGVYTVGEF MTKKEDLHVV KPTTTVDEAL
101: ELLVENRITG FPVIDEDWKL VGLVSDYDLL ALDSISGSGR TENSMFPEVD STWKTFNAVQ KLLSKTNGKL VGDLMTPAPL VVEEKTNLED AAKILLETKY
201: RRLPVVDSDG KLVGIITRGN VVRAALQIKR SGDRNA

Arabidopsis Description

CBSX1CBS domain-containing protein CBSX1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O23193]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.