Factsheet for Bra017810.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra011651.1-P
Bra012351.1-P
Bra017740.1-P
Bra024548.1-P
Bra037248.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36910.1	Bra012351.1-P	AT1G22920.1	21798944
AT4G36910.1	Bra024548.1-P	AT1G22920.1	21798944
AT4G36910.1	Bra011651.1-P	AT4G35950.1	21798944
AT4G36910.1	Bra017740.1-P	AT4G35950.1	21798944
AT4G36910.1	Bra037248.1-P	AT4G35950.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY29539	Canola	plastid	99.57	99.57
CDY62227	Canola	plastid	99.57	99.57
AT4G36910.1	Thale cress	plastid	84.98	83.9
Bra011743.1-P	Field mustard	cytosol	18.45	79.63
GSMUA_Achr7P05420_001	Banana	cytosol	52.36	78.21
GSMUA_Achr1P26070_001	Banana	cytosol	48.5	71.52
KRH77032	Soybean	plastid	61.8	63.16
KRH28440	Soybean	plastid	61.37	62.72
PGSC0003DMT400065493	Potato	plastid	63.09	62.29
VIT_07s0031g00200.t01	Wine grape	plastid	65.67	62.2
Solyc02g064950.2.1	Tomato	plastid	62.66	61.86
GSMUA_Achr1P15910_001	Banana	plastid	59.66	60.7
Solyc02g093140.2.1	Tomato	plastid	60.52	60.26
PGSC0003DMT400010303	Potato	plastid	60.52	60.26
Os08t0313200-01	Rice	plasma membrane, plastid	57.08	56.6
Zm00001d050130_P003	Maize	plastid	55.79	56.03
TraesCS7D01G288400.1	Wheat	plastid	54.94	55.65
Os09t0115500-01	Rice	plastid	53.22	54.63
Bra034605.1-P	Field mustard	plastid	53.65	53.65
TraesCS5B01G159500.1	Wheat	plastid	53.65	53.42
TraesCS7A01G295300.1	Wheat	plastid	52.36	53.04
TraesCS5D01G166900.1	Wheat	plastid	52.79	52.79
TraesCS5A01G162000.1	Wheat	plastid	53.22	52.54
KXG25872	Sorghum	plastid	50.21	51.32
Bra011489.1-P	Field mustard	plastid	51.07	50.85
Zm00001d004354_P001	Maize	plastid	51.07	47.04
HORVU5Hr1G050570.1	Barley	plastid	54.08	46.67
Bra017627.1-P	Field mustard	plastid	52.36	43.57

Protein Annotations

EnsemblPlants:Bra017810.1	EnsemblPlants:Bra017810.1-P	EnsemblPlantsGene:Bra017810	Gene3D:3.10.580.10	InterPro:CBS_dom	InterPro:IPR000644
PANTHER:PTHR43803	PANTHER:PTHR43803:SF1	PFAM:PF00571	PFscan:PS51371	SMART:SM00116	SUPFAM:SSF54631
UniParc:UPI0002540CDC	UniProt:M4DMS5	MapMan:35.1	:	:	:

Description

AT4G36910 (E=3e-104) LEJ2, CDCP2 | LEJ2 (LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 2)

Coordinates

chrA03:+:30623597..30625655

Molecular Weight (calculated)

24994.0 Da

IEP (calculated)

8.463

GRAVY (calculated)

-0.070

Length

233 amino acids

Sequence
(BLAST)

001: MDAVVHACPL SITRLRAPPS ASSPTLIPPR FLSIHSTFSP TLSSLSKSRG PSASSAGATL MAKSSSPRSG VYTVGEFMTK KDDLHVVKPT TTVDEALEIL
101: VENRITGFPV IDQDWKLVGL VSDYDLLALD SISGSGSTEN AMFPEVDSTW KTFNAVQKLL SKTNGKLVGD LMTPAPVVVE ENTNLEDAAK ILLETKYRRL
201: PVVDSDGKLV GIITRGNVVR AALQIKRTGD RNA

Best Arabidopsis Sequence Match ( AT4G36910.1 )
(BLAST)

001: MDAVLYSVPL SFTPLRASSS PSSPYLLLPR FLSVQPCHKF TFSRSFPSKS RIPSASSAAG STLMTNSSSP RSGVYTVGEF MTKKEDLHVV KPTTTVDEAL
101: ELLVENRITG FPVIDEDWKL VGLVSDYDLL ALDSISGSGR TENSMFPEVD STWKTFNAVQ KLLSKTNGKL VGDLMTPAPL VVEEKTNLED AAKILLETKY
201: RRLPVVDSDG KLVGIITRGN VVRAALQIKR SGDRNA

Arabidopsis Description

CBSX1CBS domain-containing protein CBSX1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O23193]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.