Factsheet for GSMUA_Achr1P15910_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr6P36120_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36910.1	GSMUA_Achr10P...	AT1G22920.1	21798944
AT4G36910.1	GSMUA_Achr6P36120_001	AT3G48040.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P05420_001	Banana	cytosol	57.21	83.97
GSMUA_Achr1P26070_001	Banana	cytosol	53.28	77.22
Bra011743.1-P	Field mustard	cytosol	16.16	68.52
CDX75630	Canola	cytosol	16.16	68.52
KRH77032	Soybean	plastid	62.88	63.16
Solyc02g093140.2.1	Tomato	plastid	64.19	62.82
KRH28440	Soybean	plastid	62.45	62.72
AT4G36910.1	Thale cress	plastid	63.76	61.86
PGSC0003DMT400010303	Potato	plastid	62.88	61.54
TraesCS7D01G288400.1	Wheat	plastid	60.7	60.43
Os08t0313200-01	Rice	plasma membrane, plastid	62.01	60.43
Bra017810.1-P	Field mustard	plastid	60.7	59.66
CDY62227	Canola	plastid	60.7	59.66
TraesCS7A01G295300.1	Wheat	plastid	59.83	59.57
PGSC0003DMT400065493	Potato	plastid	61.14	59.32
Solyc02g064950.2.1	Tomato	plastid	61.14	59.32
CDY29539	Canola	plastid	60.26	59.23
TraesCS5B01G159500.1	Wheat	plastid	59.83	58.55
VIT_07s0031g00200.t01	Wine grape	plastid	62.45	58.13
TraesCS5D01G166900.1	Wheat	plastid	58.52	57.51
TraesCS5A01G162000.1	Wheat	plastid	58.95	57.2
Zm00001d050130_P003	Maize	plastid	57.64	56.9
Os09t0115500-01	Rice	plastid	55.46	55.95
KXG25872	Sorghum	plastid	54.15	54.39
HORVU5Hr1G050570.1	Barley	plastid	58.52	49.63
Zm00001d004354_P001	Maize	plastid	52.84	47.83

Protein Annotations

EnsemblPlants:GSMUA_Achr1P15910_001	EnsemblPlants:GSMUA_Achr1T15910_001	EnsemblPlantsGene:GSMUA_Achr1G15910_001	Gene3D:3.10.580.10	InterPro:CBS_dom	InterPro:IPR000644
PANTHER:PTHR43803	PANTHER:PTHR43803:SF1	PFAM:PF00571	PFscan:PS51371	SEG:seg	SMART:SM00116
SUPFAM:SSF54631	UniParc:UPI0002948637	UniProt:M0S099	MapMan:35.1	:	:

Description

Putative Inosine-5'-monophosphate dehydrogenase [Source:GMGC_GENE;Acc:GSMUA_Achr1G15910_001]

Coordinates

chr1:+:11925367..11930768

Molecular Weight (calculated)

24819.0 Da

IEP (calculated)

9.178

GRAVY (calculated)

-0.017

Length

229 amino acids

Sequence
(BLAST)

001: MESVVARPSS ALRLKPPLPL HHLRCLGFGA GPLVVRGRWR SLDLSVAVAR NGALSTNSAP QSNGVYTVGD FMTKKEDLCV VKPSTSVDEA LELLVENRIT
101: GFPVIDDNWN LVGVVSDYDL LALDSVSGSG RVETSMFPEV DSTWKTFNEV QKLLGKTNGK VIGDVMTSAP LVVRETTNLE DAARILLATK YRRLPVVDSA
201: GRLVGIITRG NVVRAALQIK HANERNSQV

Best Arabidopsis Sequence Match ( AT4G36910.1 )
(BLAST)

001: MDAVLYSVPL SFTPLRASSS PSSPYLLLPR FLSVQPCHKF TFSRSFPSKS RIPSASSAAG STLMTNSSSP RSGVYTVGEF MTKKEDLHVV KPTTTVDEAL
101: ELLVENRITG FPVIDEDWKL VGLVSDYDLL ALDSISGSGR TENSMFPEVD STWKTFNAVQ KLLSKTNGKL VGDLMTPAPL VVEEKTNLED AAKILLETKY
201: RRLPVVDSDG KLVGIITRGN VVRAALQIKR SGDRNA

Arabidopsis Description

CBSX1CBS domain-containing protein CBSX1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O23193]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.