Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G162000.1 | Wheat | plastid | 97.44 | 96.61 |
| TraesCS5D01G166900.1 | Wheat | plastid | 93.59 | 93.99 |
| GSMUA_Achr7P05420_001 | Banana | cytosol | 51.28 | 76.92 |
| GSMUA_Achr1P26070_001 | Banana | cytosol | 47.86 | 70.89 |
| Os09t0115500-01 | Rice | plastid | 65.81 | 67.84 |
| Bra011743.1-P | Field mustard | cytosol | 15.38 | 66.67 |
| CDX75630 | Canola | cytosol | 15.38 | 66.67 |
| HORVU5Hr1G050570.1 | Barley | plastid | 75.64 | 65.56 |
| KXG25872 | Sorghum | plastid | 62.39 | 64.04 |
| GSMUA_Achr1P15910_001 | Banana | plastid | 58.55 | 59.83 |
| KRH28440 | Soybean | plastid | 55.56 | 57.02 |
| VIT_07s0031g00200.t01 | Wine grape | plastid | 59.4 | 56.5 |
| Solyc02g093140.2.1 | Tomato | plastid | 56.41 | 56.41 |
| PGSC0003DMT400010303 | Potato | plastid | 55.98 | 55.98 |
| Zm00001d004354_P001 | Maize | plastid | 60.26 | 55.73 |
| KRH77032 | Soybean | plastid | 54.27 | 55.7 |
| AT4G36910.1 | Thale cress | plastid | 55.13 | 54.66 |
| Solyc02g064950.2.1 | Tomato | plastid | 54.7 | 54.24 |
| CDY62227 | Canola | plastid | 53.85 | 54.08 |
| CDY29539 | Canola | plastid | 53.42 | 53.65 |
| Bra017810.1-P | Field mustard | plastid | 53.42 | 53.65 |
| PGSC0003DMT400065493 | Potato | plastid | 53.85 | 53.39 |
Protein Annotations
| Gene3D:3.10.580.10 | MapMan:35.1 | InterPro:CBS_dom | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0008150 | GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009987 | GO:GO:0019725 |
| GO:GO:0045454 | InterPro:IPR000644 | PFAM:PF00571 | PFscan:PS51371 | PANTHER:PTHR43803 | PANTHER:PTHR43803:SF1 |
| SMART:SM00116 | SUPFAM:SSF54631 | EnsemblPlantsGene:TraesCS5B01G159500 | EnsemblPlants:TraesCS5B01G159500.1 | TIGR:cd02205 | SEG:seg |
Description
No Description!
Coordinates
chr5B:-:294078609..294083667
Molecular Weight (calculated)
24881.2 Da
IEP (calculated)
9.935
GRAVY (calculated)
-0.016
Length
234 amino acids
Sequence
(BLAST)
(BLAST)
001: MEAAASPLLL SADAPLAAGR RLLLVPSRPA RAPRRGAAPS RCRRASVRAY AAAAAPAPAS GNGLVGNNNG VYTVGDFMTK KEDLHVVKVS TPVDEALEML
101: VQNRISGFPV IDDDWKLVGV VSDYDLLALD SMAGCGLADT NSSMFPEVDS TWKTFREIQR LLSKTSGKVI GDVMTPSPLV VRETTNLDAA ARLLLETKYH
201: RLPVVDSTGN LVGMITRGNV VRAALKIKKK AEGA
101: VQNRISGFPV IDDDWKLVGV VSDYDLLALD SMAGCGLADT NSSMFPEVDS TWKTFREIQR LLSKTSGKVI GDVMTPSPLV VRETTNLDAA ARLLLETKYH
201: RLPVVDSTGN LVGMITRGNV VRAALKIKKK AEGA
001: MDAVLYSVPL SFTPLRASSS PSSPYLLLPR FLSVQPCHKF TFSRSFPSKS RIPSASSAAG STLMTNSSSP RSGVYTVGEF MTKKEDLHVV KPTTTVDEAL
101: ELLVENRITG FPVIDEDWKL VGLVSDYDLL ALDSISGSGR TENSMFPEVD STWKTFNAVQ KLLSKTNGKL VGDLMTPAPL VVEEKTNLED AAKILLETKY
201: RRLPVVDSDG KLVGIITRGN VVRAALQIKR SGDRNA
101: ELLVENRITG FPVIDEDWKL VGLVSDYDLL ALDSISGSGR TENSMFPEVD STWKTFNAVQ KLLSKTNGKL VGDLMTPAPL VVEEKTNLED AAKILLETKY
201: RRLPVVDSDG KLVGIITRGN VVRAALQIKR SGDRNA
Arabidopsis Description
CBSX1CBS domain-containing protein CBSX1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O23193]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.