Factsheet for VIT_07s0031g00200.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
nucleus 1
extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
Predotar:	plastid
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_03s0038g04360.t01
VIT_04s0023g03860.t01
VIT_17s0000g07890.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36910.1	VIT_03s0038g04360.t01	AT1G22920.1	21798944
AT4G36910.1	VIT_17s0000g07890.t01	AT3G48040.1	21798944
AT4G36910.1	VIT_04s0023g03860.t01	AT4G35950.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P05420_001	Banana	cytosol	51.22	80.77
GSMUA_Achr1P26070_001	Banana	cytosol	48.78	75.95
Bra011743.1-P	Field mustard	cytosol	15.85	72.22
CDX75630	Canola	cytosol	15.85	72.22
CDY29539	Canola	plastid	62.2	65.67
CDY62227	Canola	plastid	62.2	65.67
Bra017810.1-P	Field mustard	plastid	62.2	65.67
Solyc02g093140.2.1	Tomato	plastid	62.2	65.38
AT4G36910.1	Thale cress	plastid	62.6	65.25
KRH28440	Soybean	plastid	60.16	64.91
PGSC0003DMT400010303	Potato	plastid	61.38	64.53
KRH77032	Soybean	plastid	59.76	64.47
Solyc02g064950.2.1	Tomato	plastid	61.38	63.98
PGSC0003DMT400065493	Potato	plastid	61.38	63.98
GSMUA_Achr1P15910_001	Banana	plastid	58.13	62.45
VIT_03s0063g00060.t01	Wine grape	plastid	58.13	62.17
Os08t0313200-01	Rice	plasma membrane, plastid	56.91	59.57
TraesCS5B01G159500.1	Wheat	plastid	56.5	59.4
TraesCS5A01G162000.1	Wheat	plastid	56.91	59.32
Os09t0115500-01	Rice	plastid	54.47	59.03
TraesCS7D01G288400.1	Wheat	plastid	54.88	58.7
TraesCS7A01G295300.1	Wheat	plastid	54.47	58.26
TraesCS5D01G166900.1	Wheat	plastid	54.88	57.94
Zm00001d050130_P003	Maize	plastid	54.06	57.33
KXG25872	Sorghum	plastid	51.63	55.7
HORVU5Hr1G050570.1	Barley	plastid	57.72	52.59
Zm00001d004354_P001	Maize	plastid	52.44	50.99

Protein Annotations

EntrezGene:100257777	wikigene:100257777	Gene3D:3.10.580.10	MapMan:35.1	InterPro:CBS_dom	ProteinID:CCB47048
ProteinID:CCB47048.1	UniProt:F6H4H6	EMBL:FN595233	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0008150	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0019725
GO:GO:0045454	InterPro:IPR000644	EntrezGene:LOC100257777	wikigene:LOC100257777	PFAM:PF00571	PFscan:PS51371
PANTHER:PTHR43803	PANTHER:PTHR43803:SF1	SMART:SM00116	SUPFAM:SSF54631	UniParc:UPI0001983B3D	ArrayExpress:VIT_07s0031g00200
EnsemblPlantsGene:VIT_07s0031g00200	EnsemblPlants:VIT_07s0031g00200.t01	unigene:Vvi.2350	RefSeq:XP_002283079	RefSeq:XP_002283079.1	SEG:seg

Description

No Description!

Coordinates

chr7:-:16405690..16412010

Molecular Weight (calculated)

26440.1 Da

IEP (calculated)

6.551

GRAVY (calculated)

0.080

Length

246 amino acids

Sequence
(BLAST)

001: MDAILLPETL AVVGIRPAFA SAFGSGSASF PHQMPCTLLF QPGRKPPVGS TVGSRSERIS GIRRSPALAA AGTLMANSVP SKNGVYTVGD FMTRKEDLHV
101: VKATTTVEEA LEILVENRIT GFPVIDDDWK LVGLVSDYDL LALDSISGGG LTDTIMFPEV DSTWKTFNEL QKLLSKTNGK VVGDLMTPAP VVVRETTNLE
201: DAARLLLETK YRRLPVVDSD GKLVGIITRG NVVRAALQIK RAVEGF

Best Arabidopsis Sequence Match ( AT4G36910.1 )
(BLAST)

001: MDAVLYSVPL SFTPLRASSS PSSPYLLLPR FLSVQPCHKF TFSRSFPSKS RIPSASSAAG STLMTNSSSP RSGVYTVGEF MTKKEDLHVV KPTTTVDEAL
101: ELLVENRITG FPVIDEDWKL VGLVSDYDLL ALDSISGSGR TENSMFPEVD STWKTFNAVQ KLLSKTNGKL VGDLMTPAPL VVEEKTNLED AAKILLETKY
201: RRLPVVDSDG KLVGIITRGN VVRAALQIKR SGDRNA

Arabidopsis Description

CBSX1CBS domain-containing protein CBSX1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O23193]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.