CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY04768
CDY21400
CDY25761
CDY26832
CDY30344

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36910.1	CDY04768	AT1G22920.1	21798944
AT4G36910.1	CDY21400	AT1G22920.1	21798944
AT4G36910.1	CDY25761	AT1G22920.1	21798944
AT4G36910.1	CDY26832	AT4G35950.1	21798944
AT4G36910.1	CDY30344	AT4G35950.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra011743.1-P	Field mustard	cytosol	100.0	100.0
GSMUA_Achr7P05420_001	Banana	cytosol	64.81	22.44
GSMUA_Achr1P26070_001	Banana	cytosol	61.11	20.89
CDY29539	Canola	plastid	79.63	18.45
CDY62227	Canola	plastid	79.63	18.45
KRH77032	Soybean	plastid	74.07	17.54
KRH28440	Soybean	plastid	74.07	17.54
AT4G36910.1	Thale cress	plastid	75.93	17.37
Solyc02g064950.2.1	Tomato	plastid	72.22	16.53
PGSC0003DMT400065493	Potato	plastid	72.22	16.53
GSMUA_Achr1P15910_001	Banana	plastid	68.52	16.16
VIT_07s0031g00200.t01	Wine grape	plastid	72.22	15.85
Solyc02g093140.2.1	Tomato	plastid	68.52	15.81
PGSC0003DMT400010303	Potato	plastid	68.52	15.81
TraesCS5B01G159500.1	Wheat	plastid	66.67	15.38
TraesCS7D01G288400.1	Wheat	plastid	64.81	15.22
TraesCS7A01G295300.1	Wheat	plastid	64.81	15.22
CDX69026	Canola	plastid	59.26	15.17
TraesCS5A01G162000.1	Wheat	plastid	64.81	14.83
TraesCS5D01G166900.1	Wheat	plastid	62.96	14.59
CDY49275	Canola	plastid	61.11	14.47
CDX72451	Canola	plastid	61.11	14.47
Os08t0313200-01	Rice	plasma membrane, plastid	62.96	14.47
CDY62720	Canola	plastid	61.11	14.41
CDY51959	Canola	plastid	61.11	14.1
CDX75398	Canola	plastid	59.26	14.04
Zm00001d050130_P003	Maize	plastid	59.26	13.79
HORVU5Hr1G050570.1	Barley	plastid	68.52	13.7
Os09t0115500-01	Rice	plastid	57.41	13.66
KXG25872	Sorghum	plastid	53.7	12.72
Zm00001d004354_P001	Maize	plastid	57.41	12.25

Protein Annotations

EnsemblPlants:CDX75630	EnsemblPlantsGene:GSBRNA2T00121549001	Gene3D:3.10.580.10	InterPro:CBS_dom	InterPro:IPR000644	PANTHER:PTHR43803
PANTHER:PTHR43803:SF1	PFAM:PF00571	PFscan:PS51371	ProteinID:CDX75630	ProteinID:CDX75630.1	SUPFAM:SSF54631
UniParc:UPI0002546613	MapMan:35.1	:	:	:	:

Description

BnaA01g00720D

Coordinates

chrLK031804:+:2014325..2014676

Molecular Weight (calculated)

6366.7 Da

IEP (calculated)

4.249

GRAVY (calculated)

0.094

Length

54 amino acids

Sequence
(BLAST)

1: MLKKDDLHVV KPIITVDEAL EILEENRVTW FPVLDKGWKW VGLVSDYDLL ALDW

Best Arabidopsis Sequence Match ( AT4G36910.1 )
(BLAST)

001: MDAVLYSVPL SFTPLRASSS PSSPYLLLPR FLSVQPCHKF TFSRSFPSKS RIPSASSAAG STLMTNSSSP RSGVYTVGEF MTKKEDLHVV KPTTTVDEAL
101: ELLVENRITG FPVIDEDWKL VGLVSDYDLL ALDSISGSGR TENSMFPEVD STWKTFNAVQ KLLSKTNGKL VGDLMTPAPL VVEEKTNLED AAKILLETKY
201: RRLPVVDSDG KLVGIITRGN VVRAALQIKR SGDRNA

Arabidopsis Description

CBSX1CBS domain-containing protein CBSX1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O23193]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.