Factsheet for Zm00001d004354_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

plastid: 20089766
plastid: 22065420
plastid: 23198870

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d002027_P002
Zm00001d018004_P002
Zm00001d044802_P001
Zm00001d052273_P004

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36910.1	Zm00001d002027_P002	AT1G22920.1	21798944
AT4G36910.1	Zm00001d018004_P002	AT3G48040.1	21798944
AT4G36910.1	Zm00001d044802_P001	AT3G48040.1	21798944
AT4G36910.1	Zm00001d052273_P004	AT3G48040.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG25872	Sorghum	plastid	75.89	84.21
GSMUA_Achr7P05420_001	Banana	cytosol	44.66	72.44
Os09t0115500-01	Rice	plastid	59.29	66.08
GSMUA_Achr1P26070_001	Banana	cytosol	39.92	63.92
TraesCS5D01G166900.1	Wheat	plastid	56.13	60.94
TraesCS5B01G159500.1	Wheat	plastid	55.73	60.26
TraesCS5A01G162000.1	Wheat	plastid	56.13	60.17
Zm00001d050130_P003	Maize	plastid	53.75	58.62
Bra011743.1-P	Field mustard	cytosol	12.25	57.41
CDX75630	Canola	cytosol	12.25	57.41
GSMUA_Achr1P15910_001	Banana	plastid	47.83	52.84
KRH77032	Soybean	plastid	47.43	52.63
VIT_07s0031g00200.t01	Wine grape	plastid	50.99	52.44
KRH28440	Soybean	plastid	47.04	52.19
CDY62227	Canola	plastid	47.04	51.07
CDY29539	Canola	plastid	47.04	51.07
Bra017810.1-P	Field mustard	plastid	47.04	51.07
AT4G36910.1	Thale cress	plastid	47.43	50.85
PGSC0003DMT400010303	Potato	plastid	46.64	50.43
Solyc02g093140.2.1	Tomato	plastid	46.64	50.43
HORVU5Hr1G050570.1	Barley	plastid	52.96	49.63
PGSC0003DMT400065493	Potato	plastid	45.85	49.15
Solyc02g064950.2.1	Tomato	plastid	45.85	49.15

Protein Annotations

EnsemblPlants:Zm00001d004354_P001	EnsemblPlants:Zm00001d004354_T001	EnsemblPlantsGene:Zm00001d004354	Gene3D:3.10.580.10	InterPro:CBS_dom	InterPro:IPR000644
PANTHER:PTHR43803	PANTHER:PTHR43803:SF1	PFAM:PF00571	PFscan:PS51371	ProteinID:ONM18766.1	SEG:seg
SMART:SM00116	SUPFAM:SSF54631	UniParc:UPI0008442A82	UniProt:A0A1D6EEX6	MapMan:35.1	:

Description

CBS domain-containing protein CBSX1 chloroplastic

Coordinates

chr2:-:105824109..105832763

Molecular Weight (calculated)

27407.9 Da

IEP (calculated)

10.073

GRAVY (calculated)

-0.114

Length

253 amino acids

Sequence
(BLAST)

001: MDIRLLVSAD ANLAAALSRS RSSKSAFQRQ VVPSSRASSC RSVRARSAAA AAPAAGGISG HSNYTVGDFM TRRDNLHVVQ PTTPVDQALE LLVQHRISGF
101: PVVDDDWNLV GVVSDYDLLA LDSMSGNELA DTSTNMFPDV DSTWKVLGIP NLLVYLKHQG FQVDKSSRVD KTFHELQRIL SKTNGKVIGD VMTSSPLAVR
201: INTNLDAATR LLLETKYRRL PVVDSMGKLV GMITRGNVVS AALKIKKKTE EGA

Best Arabidopsis Sequence Match ( AT4G34120.1 )
(BLAST)

001: MGSISLSNSM PITRLPLLTS LYHQSFLPIS SSSFSLLPLS NRRRSSTFSP SITVSAFFAA PASVNNNNSV PAKNGGYTVG DFMTPRQNLH VVKPSTSVDD
101: ALELLVEKKV TGLPVIDDNW TLVGVVSDYD LLALDSISGR SQNDTNLFPD VDSTWKTFNE LQKLISKTYG KVVGDLMTPS PLVVRDSTNL EDAARLLLET
201: KFRRLPVVDA DGKLIGILTR GNVVRAALQI KRETENST

Arabidopsis Description

CBSX2CBS domain-containing protein CBSX2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C5D0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.