Factsheet for Solyc02g064950.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
nucleus 1
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g062020.2.1
Solyc02g083580.2.1
Solyc03g033420.2.1
Solyc03g114070.2.1
Solyc06g073150.2.1
Solyc11g017300.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36910.1	Solyc06g073150.2.1	AT1G22920.1	21798944
AT4G36910.1	Solyc11g017300.1.1	AT1G22920.1	21798944
AT4G36910.1	Solyc03g114070.2.1	AT3G48040.1	21798944
AT4G36910.1	Solyc02g062020.2.1	AT4G35950.1	21798944
AT4G36910.1	Solyc02g083580.2.1	AT4G35950.1	21798944
AT4G36910.1	Solyc03g033420.2.1	AT4G35950.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400065493	Potato	plastid	97.03	97.03
Solyc02g093140.2.1	Tomato	plastid	77.97	78.63
GSMUA_Achr7P05420_001	Banana	cytosol	50.85	76.92
CDX75630	Canola	cytosol	16.53	72.22
Bra011743.1-P	Field mustard	cytosol	16.53	72.22
GSMUA_Achr1P26070_001	Banana	cytosol	48.31	72.15
AT4G36910.1	Thale cress	plastid	63.56	63.56
KRH28440	Soybean	plastid	60.59	62.72
CDY62227	Canola	plastid	61.86	62.66
Bra017810.1-P	Field mustard	plastid	61.86	62.66
CDY29539	Canola	plastid	61.44	62.23
KRH77032	Soybean	plastid	59.75	61.84
VIT_07s0031g00200.t01	Wine grape	plastid	63.98	61.38
GSMUA_Achr1P15910_001	Banana	plastid	59.32	61.14
TraesCS7D01G288400.1	Wheat	plastid	54.66	56.09
TraesCS7A01G295300.1	Wheat	plastid	54.24	55.65
Os08t0313200-01	Rice	plasma membrane, plastid	55.08	55.32
TraesCS5B01G159500.1	Wheat	plastid	54.24	54.7
Os09t0115500-01	Rice	plastid	52.54	54.63
Zm00001d050130_P003	Maize	plastid	53.39	54.31
TraesCS5D01G166900.1	Wheat	plastid	53.39	54.08
TraesCS5A01G162000.1	Wheat	plastid	53.81	53.81
Solyc01g107860.2.1	Tomato	plastid	52.97	51.65
KXG25872	Sorghum	plastid	49.15	50.88
HORVU5Hr1G050570.1	Barley	plastid	56.78	49.63
Zm00001d004354_P001	Maize	plastid	49.15	45.85

Protein Annotations

EnsemblPlants:Solyc02g064950.2.1	EnsemblPlantsGene:Solyc02g064950.2	Gene3D:3.10.580.10	InterPro:CBS_dom	InterPro:IPR000644	PANTHER:PTHR43803
PANTHER:PTHR43803:SF1	PFAM:PF00571	PFscan:PS51371	SMART:SM00116	SUPFAM:SSF54631	UniParc:UPI0002768A09
UniProt:K4B6T0	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr2:-:36051667..36058046

Molecular Weight (calculated)

25888.3 Da

IEP (calculated)

8.850

GRAVY (calculated)

-0.066

Length

236 amino acids

Sequence
(BLAST)

001: MASISPSGVS LHRSSAAFHH QLPCLLLSLP CHKVATFAKC FLSVRLWNSR NHFSVTASNT LTANSVEPRN GVYTVGDFMT RKDDLHVVKP STSVDEALET
101: LVERRITGFP VVDDDWKLVG LVSDYDLLAL DSVSGTGGAD ANMFPEVGSN WKTFNEVQKL ISKTKGKVVG DLMTPAPLVV RESTNLEDAA RLLLKTKYRR
201: LPVVDSDGKL VGIITRGNVV RAALHIKRIM EMEGQQ

Best Arabidopsis Sequence Match ( AT4G36910.1 )
(BLAST)

001: MDAVLYSVPL SFTPLRASSS PSSPYLLLPR FLSVQPCHKF TFSRSFPSKS RIPSASSAAG STLMTNSSSP RSGVYTVGEF MTKKEDLHVV KPTTTVDEAL
101: ELLVENRITG FPVIDEDWKL VGLVSDYDLL ALDSISGSGR TENSMFPEVD STWKTFNAVQ KLLSKTNGKL VGDLMTPAPL VVEEKTNLED AAKILLETKY
201: RRLPVVDSDG KLVGIITRGN VVRAALQIKR SGDRNA

Arabidopsis Description

CBSX1CBS domain-containing protein CBSX1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O23193]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.