Factsheet for GSMUA_Achr7P05420_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr6P36120_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36910.1	GSMUA_Achr10P...	AT1G22920.1	21798944
AT4G36910.1	GSMUA_Achr6P36120_001	AT3G48040.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P26070_001	Banana	cytosol	83.97	82.91
Bra011743.1-P	Field mustard	cytosol	22.44	64.81
CDX75630	Canola	cytosol	22.44	64.81
GSMUA_Achr1P15910_001	Banana	plastid	83.97	57.21
Os08t0313200-01	Rice	plasma membrane, plastid	84.62	56.17
Zm00001d050130_P003	Maize	plastid	81.41	54.74
KRH28440	Soybean	plastid	79.49	54.39
KRH77032	Soybean	plastid	79.49	54.39
TraesCS7A01G295300.1	Wheat	plastid	78.85	53.48
AT4G36910.1	Thale cress	plastid	80.77	53.39
TraesCS7D01G288400.1	Wheat	plastid	78.21	53.04
CDY29539	Canola	plastid	78.21	52.36
Bra017810.1-P	Field mustard	plastid	78.21	52.36
CDY62227	Canola	plastid	78.21	52.36
TraesCS5D01G166900.1	Wheat	plastid	77.56	51.93
PGSC0003DMT400010303	Potato	plastid	77.56	51.71
Solyc02g093140.2.1	Tomato	plastid	77.56	51.71
TraesCS5B01G159500.1	Wheat	plastid	76.92	51.28
TraesCS5A01G162000.1	Wheat	plastid	77.56	51.27
VIT_07s0031g00200.t01	Wine grape	plastid	80.77	51.22
Os09t0115500-01	Rice	plastid	74.36	51.1
PGSC0003DMT400065493	Potato	plastid	76.92	50.85
Solyc02g064950.2.1	Tomato	plastid	76.92	50.85
KXG25872	Sorghum	plastid	69.87	47.81
HORVU5Hr1G050570.1	Barley	plastid	78.21	45.19
Zm00001d004354_P001	Maize	plastid	72.44	44.66

Protein Annotations

EnsemblPlants:GSMUA_Achr7P05420_001	EnsemblPlants:GSMUA_Achr7T05420_001	EnsemblPlantsGene:GSMUA_Achr7G05420_001	Gene3D:3.10.580.10	InterPro:CBS_dom	InterPro:IPR000644
PANTHER:PTHR43803	PANTHER:PTHR43803:SF1	PFAM:PF00571	PFscan:PS51371	SMART:SM00116	SUPFAM:SSF54631
UniParc:UPI00029574C5	UniProt:M0TEY2	MapMan:35.1	:	:	:

Description

Putative Inosine-5'-monophosphate dehydrogenase [Source:GMGC_GENE;Acc:GSMUA_Achr7G05420_001]

Coordinates

chr7:+:4014287..4020705

Molecular Weight (calculated)

17448.0 Da

IEP (calculated)

5.304

GRAVY (calculated)

-0.254

Length

156 amino acids

Sequence
(BLAST)

001: MTKRENLHVV KPTTSVDEAL EMLVEHRITG FPVIDDDWNL VGVVSDYDLL ALDSISGSGR ADTSMFPEVD STWKAFNEIQ KLLSKTNGRT IGEVMTPAPL
101: VVRETTNLED VARQLLETKY RRLPVVDSDG KLVGIITRGN VVRAALQIKH EMERKS

Best Arabidopsis Sequence Match ( AT4G36910.1 )
(BLAST)

001: MDAVLYSVPL SFTPLRASSS PSSPYLLLPR FLSVQPCHKF TFSRSFPSKS RIPSASSAAG STLMTNSSSP RSGVYTVGEF MTKKEDLHVV KPTTTVDEAL
101: ELLVENRITG FPVIDEDWKL VGLVSDYDLL ALDSISGSGR TENSMFPEVD STWKTFNAVQ KLLSKTNGKL VGDLMTPAPL VVEEKTNLED AAKILLETKY
201: RRLPVVDSDG KLVGIITRGN VVRAALQIKR SGDRNA

Arabidopsis Description

CBSX1CBS domain-containing protein CBSX1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O23193]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.