Factsheet for GSMUA_Achr1P26070_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr6P36120_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36910.1	GSMUA_Achr10P...	AT1G22920.1	21798944
AT4G36910.1	GSMUA_Achr6P36120_001	AT3G48040.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P05420_001	Banana	cytosol	82.91	83.97
Bra011743.1-P	Field mustard	cytosol	20.89	61.11
CDX75630	Canola	cytosol	20.89	61.11
GSMUA_Achr1P15910_001	Banana	plastid	77.22	53.28
KRH77032	Soybean	plastid	75.32	52.19
KRH28440	Soybean	plastid	75.32	52.19
Os08t0313200-01	Rice	plasma membrane, plastid	77.22	51.91
Zm00001d050130_P003	Maize	plastid	75.32	51.29
Solyc02g093140.2.1	Tomato	plastid	74.05	50.0
PGSC0003DMT400010303	Potato	plastid	74.05	50.0
AT4G36910.1	Thale cress	plastid	74.05	49.58
TraesCS7A01G295300.1	Wheat	plastid	72.15	49.57
TraesCS7D01G288400.1	Wheat	plastid	72.15	49.57
VIT_07s0031g00200.t01	Wine grape	plastid	75.95	48.78
Bra017810.1-P	Field mustard	plastid	71.52	48.5
CDY29539	Canola	plastid	71.52	48.5
CDY62227	Canola	plastid	71.52	48.5
Solyc02g064950.2.1	Tomato	plastid	72.15	48.31
PGSC0003DMT400065493	Potato	plastid	71.52	47.88
TraesCS5B01G159500.1	Wheat	plastid	70.89	47.86
TraesCS5D01G166900.1	Wheat	plastid	70.25	47.64
TraesCS5A01G162000.1	Wheat	plastid	70.25	47.03
Os09t0115500-01	Rice	plastid	67.09	46.7
KXG25872	Sorghum	plastid	63.29	43.86
HORVU5Hr1G050570.1	Barley	plastid	72.15	42.22
Zm00001d004354_P001	Maize	plastid	63.92	39.92

Protein Annotations

EnsemblPlants:GSMUA_Achr1P26070_001	EnsemblPlants:GSMUA_Achr1T26070_001	EnsemblPlantsGene:GSMUA_Achr1G26070_001	Gene3D:3.10.580.10	InterPro:CBS_dom	InterPro:IPR000644
PANTHER:PTHR43803	PANTHER:PTHR43803:SF1	PFAM:PF00571	PFscan:PS51371	SMART:SM00116	SUPFAM:SSF54631
UniParc:UPI000296D4A3	UniProt:M0S364	MapMan:35.1	:	:	:

Description

Putative Inosine-5'-monophosphate dehydrogenase [Source:GMGC_GENE;Acc:GSMUA_Achr1G26070_001]

Coordinates

chr1:+:20694149..20700375

Molecular Weight (calculated)

17587.3 Da

IEP (calculated)

5.284

GRAVY (calculated)

-0.089

Length

158 amino acids

Sequence
(BLAST)

001: MVTKEDLHVV KPTTSVDEAL EMLVEYMIAG FPVIDDDQNL VGLVSDYDLL AVDSISGTGR IDRSIFPEVD STWKAFNEIQ KLLSKTNCRV IGEVMTPAPL
101: VVRETTNLED AARLLLETKY RRLPVVDSHG KLVGIITRAN VVRAALQRKH ENNKTSPV

Best Arabidopsis Sequence Match ( AT4G36910.1 )
(BLAST)

001: MDAVLYSVPL SFTPLRASSS PSSPYLLLPR FLSVQPCHKF TFSRSFPSKS RIPSASSAAG STLMTNSSSP RSGVYTVGEF MTKKEDLHVV KPTTTVDEAL
101: ELLVENRITG FPVIDEDWKL VGLVSDYDLL ALDSISGSGR TENSMFPEVD STWKTFNAVQ KLLSKTNGKL VGDLMTPAPL VVEEKTNLED AAKILLETKY
201: RRLPVVDSDG KLVGIITRGN VVRAALQIKR SGDRNA

Arabidopsis Description

CBSX1CBS domain-containing protein CBSX1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O23193]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.