Factsheet for TraesCS7D01G288400.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G504600.1
TraesCS2D01G505300.1
TraesCS6A01G309000.2
TraesCS6B01G338000.1
TraesCS6D01G288300.1
TraesCS7A01G191400.1
TraesCS7B01G096200.1
TraesCS7D01G192400.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36910.1	TraesCS2A01G504600.1	AT1G22920.1	21798944
AT4G36910.1	TraesCS2D01G505300.1	AT1G22920.1	21798944
AT4G36910.1	TraesCS6A01G309000.2	AT3G48040.1	21798944
AT4G36910.1	TraesCS6B01G338000.1	AT3G48040.1	21798944
AT4G36910.1	TraesCS6D01G288300.1	AT3G48040.1	21798944
AT4G36910.1	TraesCS7A01G191400.1	AT3G48040.1	21798944
AT4G36910.1	TraesCS7B01G096200.1	AT3G48040.1	21798944
AT4G36910.1	TraesCS7D01G192400.1	AT3G48040.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G295300.1	Wheat	plastid	86.96	86.96
GSMUA_Achr7P05420_001	Banana	cytosol	53.04	78.21
GSMUA_Achr1P26070_001	Banana	cytosol	49.57	72.15
Zm00001d050130_P003	Maize	plastid	71.3	70.69
Os08t0313200-01	Rice	plasma membrane, plastid	70.43	68.94
Bra011743.1-P	Field mustard	cytosol	15.22	64.81
CDX75630	Canola	cytosol	15.22	64.81
TraesCS5D01G166900.1	Wheat	plastid	61.74	60.94
GSMUA_Achr1P15910_001	Banana	plastid	60.43	60.7
KRH77032	Soybean	plastid	58.26	58.77
KRH28440	Soybean	plastid	56.52	57.02
PGSC0003DMT400010303	Potato	plastid	57.83	56.84
Solyc02g093140.2.1	Tomato	plastid	57.39	56.41
AT4G36910.1	Thale cress	plastid	56.96	55.51
CDY29539	Canola	plastid	56.09	55.36
CDY62227	Canola	plastid	55.65	54.94
Bra017810.1-P	Field mustard	plastid	55.65	54.94
VIT_07s0031g00200.t01	Wine grape	plastid	58.7	54.88
PGSC0003DMT400065493	Potato	plastid	56.09	54.66
Solyc02g064950.2.1	Tomato	plastid	56.09	54.66

Protein Annotations

EnsemblPlants:TraesCS7D01G288400.1	EnsemblPlantsGene:TraesCS7D01G288400	Gene3D:3.10.580.10	InterPro:CBS_dom	InterPro:IPR000644	PANTHER:PTHR43803
PANTHER:PTHR43803:SF1	PFAM:PF00571	PFscan:PS51371	SMART:SM00116	SUPFAM:SSF54631	MapMan:35.1

Description

No Description!

Coordinates

chr7D:-:320277417..320292675

Molecular Weight (calculated)

24856.0 Da

IEP (calculated)

10.036

GRAVY (calculated)

-0.010

Length

230 amino acids

Sequence
(BLAST)

001: MAARLLLLSF DCPAVAGGRR SRLSAVPRMS SGAPLVRPPA SSVRAFAVTA ARGKLPHRTS VAVEGGGVYT VGDFMTKREQ LHVVKPSTSV DEALERLVEH
101: RITGFPVTDD HWNLVGVVSD YDLLALDSIS GNGQTEADIF PEVDSTWKTF HHIQKLLSKT NGKVVSDVMT SAPLVVRETT NLEDAARLLL VSKYRRLPVV
201: DSSGKLVGII TRGNVVRAAL EFKKNVEGSL

Best Arabidopsis Sequence Match ( AT4G36910.1 )
(BLAST)

001: MDAVLYSVPL SFTPLRASSS PSSPYLLLPR FLSVQPCHKF TFSRSFPSKS RIPSASSAAG STLMTNSSSP RSGVYTVGEF MTKKEDLHVV KPTTTVDEAL
101: ELLVENRITG FPVIDEDWKL VGLVSDYDLL ALDSISGSGR TENSMFPEVD STWKTFNAVQ KLLSKTNGKL VGDLMTPAPL VVEEKTNLED AAKILLETKY
201: RRLPVVDSDG KLVGIITRGN VVRAALQIKR SGDRNA

Arabidopsis Description

CBSX1CBS domain-containing protein CBSX1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O23193]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.