Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, plastid
Predictor Summary:
Predictor Summary:
- plastid 9
- nucleus 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plasma membrane:
27800704
|
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os02t0742200-01 | |
| Os04t0654700-02 | |
| Os06t0234200-03 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G36910.1 | Os04t0654700-02 | AT1G22920.1 | 21798944 |
| AT4G36910.1 | Os02t0742200-01 | AT3G48040.1 | 21798944 |
| AT4G36910.1 | Os06t0234200-03 | AT3G48040.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr7P05420_001 | Banana | cytosol | 56.17 | 84.62 |
| GSMUA_Achr1P26070_001 | Banana | cytosol | 51.91 | 77.22 |
| Zm00001d050130_P003 | Maize | plastid | 74.04 | 75.0 |
| TraesCS7A01G295300.1 | Wheat | plastid | 71.06 | 72.61 |
| TraesCS7D01G288400.1 | Wheat | plastid | 68.94 | 70.43 |
| Os09t0115500-01 | Rice | plastid | 61.28 | 63.44 |
| Bra011743.1-P | Field mustard | cytosol | 14.47 | 62.96 |
| CDX75630 | Canola | cytosol | 14.47 | 62.96 |
| GSMUA_Achr1P15910_001 | Banana | plastid | 60.43 | 62.01 |
| KRH28440 | Soybean | plastid | 60.0 | 61.84 |
| KRH77032 | Soybean | plastid | 59.57 | 61.4 |
| PGSC0003DMT400010303 | Potato | plastid | 58.72 | 58.97 |
| Solyc02g093140.2.1 | Tomato | plastid | 58.72 | 58.97 |
| AT4G36910.1 | Thale cress | plastid | 57.87 | 57.63 |
| CDY62227 | Canola | plastid | 56.6 | 57.08 |
| CDY29539 | Canola | plastid | 56.6 | 57.08 |
| Bra017810.1-P | Field mustard | plastid | 56.6 | 57.08 |
| VIT_07s0031g00200.t01 | Wine grape | plastid | 59.57 | 56.91 |
| PGSC0003DMT400065493 | Potato | plastid | 55.74 | 55.51 |
| Solyc02g064950.2.1 | Tomato | plastid | 55.32 | 55.08 |
Protein Annotations
| EMBL:AK121969 | EnsemblPlants:Os08t0313200-01 | EnsemblPlantsGene:Os08g0313200 | EntrezGene:4345241 | Gene3D:3.10.580.10 | InterPro:CBS_dom |
| InterPro:IPR000644 | PANTHER:PTHR43803 | PANTHER:PTHR43803:SF1 | PFAM:PF00571 | PFscan:PS51371 | ProteinID:BAD31758.1 |
| ProteinID:BAF23428.1 | ProteinID:BAT04847.1 | ProteinID:EEE68456.1 | RefSeq:XP_015650804.1 | SEG:seg | SignalP:SignalP-noTM |
| SMART:SM00116 | SUPFAM:SSF54631 | UniParc:UPI00003FE8CD | UniProt:Q69LL7 | MapMan:35.1 | : |
Description
cystathionine b-synthase domain containing protein OsCBSX1, CBS domain containing protein OsCBSX1Similar to (clone pCDH1) carbon monoxide dehydrogenase (cdhA). (Os08t0313200-01)
Coordinates
chr8:+:13359083..13367573
Molecular Weight (calculated)
25140.3 Da
IEP (calculated)
7.675
GRAVY (calculated)
-0.008
Length
235 amino acids
Sequence
(BLAST)
(BLAST)
001: MGATLLLLCA DFSAVAGGRR RPSLPSEPRL AAPAAGSRAP PSRASVRPSA AAAPLAARGL PHHASVAGQN SGIYTVGDFM TKREELHVVK STTSVDEALE
101: MLVEHRITGF PVIDDEWNLV GVVSDYDLLA LDSISGNGLA EVDIFPEVDS TWKTFNEIQK LLSKTNGKVI GDVMTSAPLV VRETTNLEDA ARLLLETKYR
201: RLPVVDSSGK LVGIITRGNV VRAALKIKKK FEGEL
101: MLVEHRITGF PVIDDEWNLV GVVSDYDLLA LDSISGNGLA EVDIFPEVDS TWKTFNEIQK LLSKTNGKVI GDVMTSAPLV VRETTNLEDA ARLLLETKYR
201: RLPVVDSSGK LVGIITRGNV VRAALKIKKK FEGEL
001: MDAVLYSVPL SFTPLRASSS PSSPYLLLPR FLSVQPCHKF TFSRSFPSKS RIPSASSAAG STLMTNSSSP RSGVYTVGEF MTKKEDLHVV KPTTTVDEAL
101: ELLVENRITG FPVIDEDWKL VGLVSDYDLL ALDSISGSGR TENSMFPEVD STWKTFNAVQ KLLSKTNGKL VGDLMTPAPL VVEEKTNLED AAKILLETKY
201: RRLPVVDSDG KLVGIITRGN VVRAALQIKR SGDRNA
101: ELLVENRITG FPVIDEDWKL VGLVSDYDLL ALDSISGSGR TENSMFPEVD STWKTFNAVQ KLLSKTNGKL VGDLMTPAPL VVEEKTNLED AAKILLETKY
201: RRLPVVDSDG KLVGIITRGN VVRAALQIKR SGDRNA
Arabidopsis Description
CBSX1CBS domain-containing protein CBSX1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O23193]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.