CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
nucleus 1
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH03338
KRH52586
KRH54429
KRH54430
KRH57035
KRH61926
KRH63489

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36910.1	KRH52586	AT1G22920.1	21798944
AT4G36910.1	KRH61926	AT1G22920.1	21798944
AT4G36910.1	KRH03338	AT3G48040.1	21798944
AT4G36910.1	KRH54429	AT3G48040.1	21798944
AT4G36910.1	KRH54430	AT3G48040.1	21798944
AT4G36910.1	KRH57035	AT3G48040.1	21798944
AT4G36910.1	KRH63489	AT3G48040.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH77032	Soybean	plastid	92.98	92.98
GSMUA_Achr7P05420_001	Banana	cytosol	54.39	79.49
GSMUA_Achr1P26070_001	Banana	cytosol	52.19	75.32
Bra011743.1-P	Field mustard	cytosol	17.54	74.07
CDX75630	Canola	cytosol	17.54	74.07
AT4G36910.1	Thale cress	plastid	64.91	62.71
GSMUA_Achr1P15910_001	Banana	plastid	62.72	62.45
PGSC0003DMT400010303	Potato	plastid	63.6	61.97
Solyc02g093140.2.1	Tomato	plastid	63.16	61.54
Bra017810.1-P	Field mustard	plastid	62.72	61.37
CDY29539	Canola	plastid	62.72	61.37
CDY62227	Canola	plastid	62.72	61.37
Solyc02g064950.2.1	Tomato	plastid	62.72	60.59
PGSC0003DMT400065493	Potato	plastid	62.72	60.59
VIT_07s0031g00200.t01	Wine grape	plastid	64.91	60.16
Os08t0313200-01	Rice	plasma membrane, plastid	61.84	60.0
Zm00001d050130_P003	Maize	plastid	58.77	57.76
TraesCS7D01G288400.1	Wheat	plastid	57.02	56.52
TraesCS7A01G295300.1	Wheat	plastid	56.58	56.09
TraesCS5B01G159500.1	Wheat	plastid	57.02	55.56
Os09t0115500-01	Rice	plastid	54.82	55.07
TraesCS5D01G166900.1	Wheat	plastid	56.14	54.94
TraesCS5A01G162000.1	Wheat	plastid	56.14	54.24
KRH50338	Soybean	plastid	52.63	54.05
KRH70676	Soybean	plastid	53.07	53.78
KXG25872	Sorghum	plastid	52.19	52.19
HORVU5Hr1G050570.1	Barley	plastid	57.89	48.89
Zm00001d004354_P001	Maize	plastid	52.19	47.04

Protein Annotations

EMBL:ACUP02006751	EMBL:BT092214	EnsemblPlants:KRH28440	EnsemblPlantsGene:GLYMA_11G053700	EntrezGene:100527375	Gene3D:3.10.580.10
InterPro:CBS_dom	InterPro:IPR000644	PANTHER:PTHR43803	PANTHER:PTHR43803:SF1	PFAM:PF00571	PFscan:PS51371
ProteinID:KRH28440	ProteinID:KRH28440.1	SEG:seg	SMART:SM00116	SUPFAM:SSF54631	UniParc:UPI0001B157EF
UniProt:C6T453	MapMan:35.1	:	:	:	:

Description

hypothetical protein

Coordinates

chr11:-:4029512..4033266

Molecular Weight (calculated)

25141.5 Da

IEP (calculated)

8.911

GRAVY (calculated)

-0.147

Length

228 amino acids

Sequence
(BLAST)

001: MDSALSRLHL HNLPPLSSAA HRPLLQPLAA AASFYRSSPP LPRLRLSPLL AANTLTANDV SPRSGLYTVG DFMTKKEDLH VVKPTTSVDE ALEILVENRI
101: TGFPVIDDNW KLVGVVSDYD LLALDSISGH GLKDNNMFPE VDSTWKTFNE VQKLLSKTNG KLIGELMTTA PMVVRETTNL EDAARLLLET KFRRLPVVDA
201: EGRLVGIITR GNVVRAALHM KQANQKKE

Best Arabidopsis Sequence Match ( AT4G36910.1 )
(BLAST)

001: MDAVLYSVPL SFTPLRASSS PSSPYLLLPR FLSVQPCHKF TFSRSFPSKS RIPSASSAAG STLMTNSSSP RSGVYTVGEF MTKKEDLHVV KPTTTVDEAL
101: ELLVENRITG FPVIDEDWKL VGLVSDYDLL ALDSISGSGR TENSMFPEVD STWKTFNAVQ KLLSKTNGKL VGDLMTPAPL VVEEKTNLED AAKILLETKY
201: RRLPVVDSDG KLVGIITRGN VVRAALQIKR SGDRNA

Arabidopsis Description

CBSX1CBS domain-containing protein CBSX1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O23193]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.