Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
- nucleus 1
- cytosol 1
- mitochondrion 3
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G36910.1 | PGSC0003DMT400023896 | AT1G22920.1 | 21798944 |
| AT4G36910.1 | PGSC0003DMT400069203 | AT1G22920.1 | 21798944 |
| AT4G36910.1 | PGSC0003DMT400063227 | AT3G48040.1 | 21798944 |
| AT4G36910.1 | PGSC0003DMT400063229 | AT3G48040.1 | 21798944 |
| AT4G36910.1 | PGSC0003DMT400009227 | AT4G35950.1 | 21798944 |
| AT4G36910.1 | PGSC0003DMT400058108 | AT4G35950.1 | 21798944 |
| AT4G36910.1 | PGSC0003DMT400061371 | AT4G35950.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g093140.2.1 | Tomato | plastid | 97.01 | 97.01 |
| PGSC0003DMT400065493 | Potato | plastid | 78.63 | 77.97 |
| GSMUA_Achr7P05420_001 | Banana | cytosol | 51.71 | 77.56 |
| GSMUA_Achr1P26070_001 | Banana | cytosol | 50.0 | 74.05 |
| Bra011743.1-P | Field mustard | cytosol | 15.81 | 68.52 |
| CDX75630 | Canola | cytosol | 15.81 | 68.52 |
| KRH28440 | Soybean | plastid | 61.97 | 63.6 |
| KRH77032 | Soybean | plastid | 61.97 | 63.6 |
| GSMUA_Achr1P15910_001 | Banana | plastid | 61.54 | 62.88 |
| AT4G36910.1 | Thale cress | plastid | 61.97 | 61.44 |
| VIT_07s0031g00200.t01 | Wine grape | plastid | 64.53 | 61.38 |
| Bra017810.1-P | Field mustard | plastid | 60.26 | 60.52 |
| CDY62227 | Canola | plastid | 60.26 | 60.52 |
| CDY29539 | Canola | plastid | 59.83 | 60.09 |
| Os08t0313200-01 | Rice | plasma membrane, plastid | 58.97 | 58.72 |
| TraesCS7A01G295300.1 | Wheat | plastid | 57.27 | 58.26 |
| TraesCS7D01G288400.1 | Wheat | plastid | 56.84 | 57.83 |
| Zm00001d050130_P003 | Maize | plastid | 56.84 | 57.33 |
| TraesCS5B01G159500.1 | Wheat | plastid | 55.98 | 55.98 |
| Os09t0115500-01 | Rice | plastid | 53.85 | 55.51 |
| TraesCS5A01G162000.1 | Wheat | plastid | 55.56 | 55.08 |
| TraesCS5D01G166900.1 | Wheat | plastid | 54.7 | 54.94 |
| PGSC0003DMT400066577 | Potato | plastid | 51.28 | 52.17 |
| KXG25872 | Sorghum | plastid | 48.72 | 50.0 |
| HORVU5Hr1G050570.1 | Barley | plastid | 55.56 | 48.15 |
| Zm00001d004354_P001 | Maize | plastid | 50.43 | 46.64 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400010303 | EnsemblPlantsGene:PGSC0003DMG400004027 | EntrezGene:102582235 | Gene3D:3.10.580.10 | InterPro:CBS_dom | InterPro:IPR000644 |
| PANTHER:PTHR43803 | PANTHER:PTHR43803:SF1 | PFAM:PF00571 | PFscan:PS51371 | PGSC:PGSC0003DMG400004027 | RefSeq:XP_015168572.1 |
| SEG:seg | SMART:SM00116 | SUPFAM:SSF54631 | UniParc:UPI000296B22D | UniProt:M0ZXU3 | MapMan:35.1 |
Description
CBS domain containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400004027]
Coordinates
chr2:-:43459745..43466040
Molecular Weight (calculated)
25649.0 Da
IEP (calculated)
9.808
GRAVY (calculated)
-0.074
Length
234 amino acids
Sequence
(BLAST)
(BLAST)
001: MASISPSGIW LHRTSAAFHR QLPCLLLSLS GHKLAASTKF YLPLRLSYSR DTFRLASANT LTANSVSPRN GVYTVGDFMT RKEELHVVKP TTSVDEALEA
101: LVEHRITGFP VIDDNWKLVG LVSDYDLLAL DSVSGTGTAD AGIFPEVDSN WKTFNEVQKL LGKTKGKVVG DLMTPAPLVV RESTNLEDAA RLLLKTKYRR
201: LPVVDGKGKL VGIITRGNVV RAALQIKRAT EMED
101: LVEHRITGFP VIDDNWKLVG LVSDYDLLAL DSVSGTGTAD AGIFPEVDSN WKTFNEVQKL LGKTKGKVVG DLMTPAPLVV RESTNLEDAA RLLLKTKYRR
201: LPVVDGKGKL VGIITRGNVV RAALQIKRAT EMED
001: MDAVLYSVPL SFTPLRASSS PSSPYLLLPR FLSVQPCHKF TFSRSFPSKS RIPSASSAAG STLMTNSSSP RSGVYTVGEF MTKKEDLHVV KPTTTVDEAL
101: ELLVENRITG FPVIDEDWKL VGLVSDYDLL ALDSISGSGR TENSMFPEVD STWKTFNAVQ KLLSKTNGKL VGDLMTPAPL VVEEKTNLED AAKILLETKY
201: RRLPVVDSDG KLVGIITRGN VVRAALQIKR SGDRNA
101: ELLVENRITG FPVIDEDWKL VGLVSDYDLL ALDSISGSGR TENSMFPEVD STWKTFNAVQ KLLSKTNGKL VGDLMTPAPL VVEEKTNLED AAKILLETKY
201: RRLPVVDSDG KLVGIITRGN VVRAALQIKR SGDRNA
Arabidopsis Description
CBSX1CBS domain-containing protein CBSX1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O23193]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.