Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- cytosol 1
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d002027_P002 | |
| Zm00001d018004_P002 | |
| Zm00001d044802_P001 | |
| Zm00001d052273_P004 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr7P05420_001 | Banana | cytosol | 54.74 | 81.41 |
| GSMUA_Achr1P26070_001 | Banana | cytosol | 51.29 | 75.32 |
| Os08t0313200-01 | Rice | plasma membrane, plastid | 75.0 | 74.04 |
| TraesCS7D01G288400.1 | Wheat | plastid | 70.69 | 71.3 |
| TraesCS7A01G295300.1 | Wheat | plastid | 67.67 | 68.26 |
| Bra011743.1-P | Field mustard | cytosol | 13.79 | 59.26 |
| CDX75630 | Canola | cytosol | 13.79 | 59.26 |
| KRH77032 | Soybean | plastid | 58.19 | 59.21 |
| KRH28440 | Soybean | plastid | 57.76 | 58.77 |
| GSMUA_Achr1P15910_001 | Banana | plastid | 56.9 | 57.64 |
| PGSC0003DMT400010303 | Potato | plastid | 57.33 | 56.84 |
| Solyc02g093140.2.1 | Tomato | plastid | 57.33 | 56.84 |
| CDY62227 | Canola | plastid | 56.03 | 55.79 |
| CDY29539 | Canola | plastid | 56.03 | 55.79 |
| Bra017810.1-P | Field mustard | plastid | 56.03 | 55.79 |
| AT4G36910.1 | Thale cress | plastid | 56.03 | 55.08 |
| VIT_07s0031g00200.t01 | Wine grape | plastid | 57.33 | 54.06 |
| PGSC0003DMT400065493 | Potato | plastid | 54.74 | 53.81 |
| Zm00001d004354_P001 | Maize | plastid | 58.62 | 53.75 |
| Solyc02g064950.2.1 | Tomato | plastid | 54.31 | 53.39 |
Protein Annotations
| EMBL:EU959640 | EMBL:EU966033 | EnsemblPlants:Zm00001d050130_P003 | EnsemblPlants:Zm00001d050130_T003 | EnsemblPlantsGene:Zm00001d050130 | Gene3D:3.10.580.10 |
| InterPro:CBS_dom | InterPro:IPR000644 | PANTHER:PTHR43803 | PANTHER:PTHR43803:SF1 | PFAM:PF00571 | PFscan:PS51371 |
| ProteinID:AQK51995.1 | SEG:seg | SMART:SM00116 | SUPFAM:SSF54631 | UniParc:UPI000182C5D7 | UniProt:B6T3S5 |
| MapMan:35.1 | : | : | : | : | : |
Description
IMP dehydrogenase
Coordinates
chr4:+:68040890..68057070
Molecular Weight (calculated)
24703.9 Da
IEP (calculated)
9.069
GRAVY (calculated)
0.024
Length
232 amino acids
Sequence
(BLAST)
(BLAST)
001: MDATLLLLPA NCTAAASGRM RPRLPAGPHV ASPGPSARPR TSIRASAVSA ALAVRGLPQH ASVAGQSTGS YRVGDVMTKR EELHVVKPTT SVDDALEMLV
101: KHRISGFPVI DDDWNLVGVV SDYDLLALDT ISGAGPAEAD IFPEVDSTWK TFHEIQKLLS KTNGKVIADV MTPAPLVVRE TTNLEDAARL LLVTKYRRLP
201: VVDSSGKLVG IITRGNVVQA ALEIKKKVEG TL
101: KHRISGFPVI DDDWNLVGVV SDYDLLALDT ISGAGPAEAD IFPEVDSTWK TFHEIQKLLS KTNGKVIADV MTPAPLVVRE TTNLEDAARL LLVTKYRRLP
201: VVDSSGKLVG IITRGNVVQA ALEIKKKVEG TL
001: MDAVLYSVPL SFTPLRASSS PSSPYLLLPR FLSVQPCHKF TFSRSFPSKS RIPSASSAAG STLMTNSSSP RSGVYTVGEF MTKKEDLHVV KPTTTVDEAL
101: ELLVENRITG FPVIDEDWKL VGLVSDYDLL ALDSISGSGR TENSMFPEVD STWKTFNAVQ KLLSKTNGKL VGDLMTPAPL VVEEKTNLED AAKILLETKY
201: RRLPVVDSDG KLVGIITRGN VVRAALQIKR SGDRNA
101: ELLVENRITG FPVIDEDWKL VGLVSDYDLL ALDSISGSGR TENSMFPEVD STWKTFNAVQ KLLSKTNGKL VGDLMTPAPL VVEEKTNLED AAKILLETKY
201: RRLPVVDSDG KLVGIITRGN VVRAALQIKR SGDRNA
Arabidopsis Description
CBSX1CBS domain-containing protein CBSX1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O23193]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.