Factsheet for PGSC0003DMT400061371

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus, plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400037608
PGSC0003DMT400065964

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G51300.1	PGSC0003DMT400037608	AT4G32650.1	15299147
AT3G51300.1	PGSC0003DMT400065964	AT4G32650.1	15299147

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g062020.2.1	Tomato	plastid	100.0	100.0
PGSC0003DMT400058108	Potato	cytosol	96.95	96.95
PGSC0003DMT400009227	Potato	cytosol	96.45	96.45
Bra040869.1-P	Field mustard	cytosol	85.28	96.0
AT2G17800.1	Thale cress	cytosol	95.94	95.94
Bra002093.1-P	Field mustard	cytosol	95.43	95.43
AT3G51300.1	Thale cress	cytosol, plastid	94.92	94.92
AT4G35950.1	Thale cress	cytosol	94.92	94.92
Bra017740.1-P	Field mustard	cytosol	94.42	94.42
Bra037248.1-P	Field mustard	cytosol	93.91	93.91
KRH28825	Soybean	cytosol	93.91	93.91
Bra011651.1-P	Field mustard	cytosol	93.91	93.91
KRH76629	Soybean	cytosol	93.91	93.91
Bra036819.1-P	Field mustard	cytosol, plastid	92.89	92.89
Bra012858.1-P	Field mustard	cytosol, plastid	92.89	92.89
Bra038892.1-P	Field mustard	cytosol, plastid	92.39	92.39
KRH08028	Soybean	cytosol	92.39	92.39
KRH69754	Soybean	cytosol	91.37	91.37
CDY71157	Canola	cytosol	78.17	91.12
PGSC0003DMT400031185	Potato	cytosol	47.72	90.38
PGSC0003DMT400015836	Potato	cytosol, nucleus, plastid	90.36	89.9
VIT_04s0023g03860.t01	Wine grape	cytosol	88.83	89.29
PGSC0003DMT400027852	Potato	cytosol	81.22	81.22
PGSC0003DMT400031188	Potato	cytosol	32.49	78.05
PGSC0003DMT400063229	Potato	cytosol	81.73	76.67
PGSC0003DMT400004254	Potato	cytosol	77.67	73.56
PGSC0003DMT400063227	Potato	cytosol	58.38	71.88
PGSC0003DMT400022302	Potato	cytosol	75.13	70.48
PGSC0003DMT400000816	Potato	cytosol	74.62	69.67

Protein Annotations

EntrezGene:102584039	EntrezGene:102585889	MapMan:27.4.1	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0007154	GO:GO:0007165	GO:GO:0007264	GO:GO:0008150	GO:GO:0009987
GO:GO:0016020	GO:GO:0016787	InterPro:IPR003578	UniProt:M1C7E1	InterPro:P-loop_NTPase	PFAM:PF00071
EnsemblPlantsGene:PGSC0003DMG400023882	PGSC:PGSC0003DMG400023882	EnsemblPlants:PGSC0003DMT400061371	PRINTS:PR00449	PFscan:PS51420	PANTHER:PTHR24072
PANTHER:PTHR24072:SF179	SMART:SM00173	SMART:SM00174	SMART:SM00175	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom
InterPro:Small_GTPase	InterPro:Small_GTPase_Rho	TIGRFAMs:TIGR00231	UniParc:UPI0002767ECF	RefSeq:XP_006343356.1	RefSeq:XP_006361941.1
RefSeq:XP_006361942.1	SEG:seg	:	:	:	:

Description

GTP-binding Rop/Rac GTPase [Source:PGSC_GENE;Acc:PGSC0003DMG400023882]

Coordinates

chr2:-:20034529..20038815

Molecular Weight (calculated)

21491.9 Da

IEP (calculated)

9.537

GRAVY (calculated)

-0.094

Length

197 amino acids

Sequence
(BLAST)

001: MSASRFIKCV TVGDGAVGKT CLLISYTSNT FPTDYVPTVF DNFSANVVVN GATVNLGLWD TAGQEDYNRL RPLSYRGADV FILAFSLISK ASYENVSKKW
101: IPELKHYAPG VPIVLVGTKL DLRDDKQFFI DHPGAVPITT AQGEELRKTI GAPSYIECSS KTQENVKGVF DAAIKVVLQP PKAKKKKGKS QRACSIL

Best Arabidopsis Sequence Match ( AT2G17800.2 )
(BLAST)

001: MSASRFIKCV TVGDGAVGKT CLLISYTSNT FPTDYVPTVF DNFSANVVVN GATVNLGLWD TAGQEDYNRL RPLSYRGADV FILAFSLISK ASYENVSKKW
101: IPELKHYAPG VPIVLVGTKL DLRDDKQFFI DHPGAVPITT AQGEELKKLI GAPAYIECSS KTQENVKGVF DAAIRVVLQP PKQKKKKSKA QKACSIL

Arabidopsis Description

ARAC1ROP3 [Source:UniProtKB/TrEMBL;Acc:A0A178VRA4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.