Factsheet for PGSC0003DMT400065964

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 3
plasma membrane 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400002746
PGSC0003DMT400009227
PGSC0003DMT400017804
PGSC0003DMT400058108
PGSC0003DMT400061090
PGSC0003DMT400061371
PGSC0003DMT400062100

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32650.1	PGSC0003DMT400002746	AT2G26650.1	12678562
AT4G32650.1	PGSC0003DMT400002746	AT2G26650.1	15299147
AT4G32650.1	PGSC0003DMT400009227	AT3G51300.1	15299147
AT4G32650.1	PGSC0003DMT400058108	AT3G51300.1	15299147
AT4G32650.1	PGSC0003DMT400061371	AT3G51300.1	15299147
AT4G32650.1	PGSC0003DMT400061090	AT4G22200.1	12678562
AT4G32650.1	PGSC0003DMT400062100	AT4G22200.1	12678562
AT4G32650.1	PGSC0003DMT400017804	AT5G14570.1	15299147

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g010080.2.1	Tomato	plastid	96.36	96.82
PGSC0003DMT400037608	Potato	plastid	73.06	74.0
VIT_04s0008g04510.t01	Wine grape	cytosol, mitochondrion, peroxisome, plasma membrane	69.57	69.57
KRH61886	Soybean	plasma membrane	60.06	60.64
GSMUA_Achr5P09770_001	Banana	plasma membrane	61.81	59.72
GSMUA_Achr1P05260_001	Banana	plasma membrane	59.9	59.72
AT4G32650.1	Thale cress	plastid	60.7	57.85
Os01t0718700-00	Rice	endoplasmic reticulum, plasma membrane	32.96	55.76
HORVU3Hr1G068040.1	Barley	plasma membrane	37.72	55.61
KRH52547	Soybean	cytosol	51.98	55.22
Os04t0117500-00	Rice	plasma membrane	23.61	52.1
TraesCS3D01G246300.1	Wheat	plastid	46.59	49.41
TraesCS3A01G245200.1	Wheat	mitochondrion	46.43	48.75
Os06t0254200-00	Rice	plasma membrane, plastid	46.91	48.52
OQU87429	Sorghum	mitochondrion	46.75	47.2
Zm00001d011723_P002	Maize	cytosol, plasma membrane, plastid	46.12	45.47
Zm00001d016987_P001	Maize	plasma membrane	41.36	44.31
Zm00001d011729_P002	Maize	cytosol	43.74	43.6
EES07044	Sorghum	cytosol, mitochondrion, peroxisome, plasma membrane	40.41	42.43
PGSC0003DMT400091020	Potato	peroxisome, plasma membrane	40.89	42.23
TraesCS3B01G274500.1	Wheat	plastid	42.16	41.11
PGSC0003DMT400054339	Potato	plasma membrane	43.58	39.97
PGSC0003DMT400024968	Potato	cytosol, plasma membrane, vacuole	42.47	38.9
PGSC0003DMT400002746	Potato	plasma membrane	46.75	33.75
PGSC0003DMT400074787	Potato	cytosol, nucleus, plasma membrane	42.79	31.36
PGSC0003DMT400061090	Potato	cytosol	39.46	30.22
PGSC0003DMT400054318	Potato	nucleus	15.06	30.16
PGSC0003DMT400062100	Potato	plasma membrane	39.78	29.81
PGSC0003DMT400024866	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	12.36	26.99
PGSC0003DMT400034446	Potato	cytosol	31.06	23.67
CDY61287	Canola	plasma membrane	16.48	19.62
Bra021279.1-P	Field mustard	nucleus	15.85	17.48
CDY10020	Canola	cytosol	6.5	12.02

Protein Annotations

Gene3D:1.10.287.70	EntrezGene:102599698	Gene3D:2.60.120.10	MapMan:24.3.2.2	GO:GO:0003674	GO:GO:0005215
GO:GO:0005216	GO:GO:0005249	GO:GO:0005575	GO:GO:0006810	GO:GO:0006811	GO:GO:0006813
GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0034220	GO:GO:0055085
GO:GO:0071805	InterPro:IPR000595	InterPro:IPR014710	InterPro:IPR021789	InterPro:Ion_trans_dom	InterPro:KHA_dom
InterPro:K_chnl_volt-dep_EAG/ELK/ERG	UniProt:M1CEV4	PFAM:PF00027	PFAM:PF00520	PFAM:PF11834	EnsemblPlantsGene:PGSC0003DMG400025678
PGSC:PGSC0003DMG400025678	EnsemblPlants:PGSC0003DMT400065964	PRINTS:PR01463	PFscan:PS50042	PFscan:PS51490	PANTHER:PTHR10217
PANTHER:PTHR10217:SF537	InterPro:RmlC-like_jellyroll	SMART:SM00100	SUPFAM:SSF51206	SUPFAM:SSF81324	TMHMM:TMhelix
UniParc:UPI000296CDEA	RefSeq:XP_006366902.1	InterPro:cNMP-bd-like	InterPro:cNMP-bd_dom	SEG:seg	:

Description

Potassium channel NtKC1 [Source:PGSC_GENE;Acc:PGSC0003DMG400025678]

Coordinates

chr00:+:19798323..19808676

Molecular Weight (calculated)

72415.9 Da

IEP (calculated)

9.318

GRAVY (calculated)

-0.009

Length

631 amino acids

Sequence
(BLAST)

001: MSETTRSPMP LSETRSPMPL LFRRHSSGEI RNLASLSSSL LPAFGTVMGE SSVRLKRFLI APYDRRYRLW QAFLVVLVVY SAWSSPFELA FSKASTGALL
101: PVDLVVDAFF AIDIILTFFV AYLDKSTYLL VEEHKKIAFR YVTHLWFPMD VASTLPFQTI YRVVTGKTSR GQVFGFLNLL RLWRLRRVSK FFSRLEKDTR
201: FSYFWTRYFK LICVTLFAVH SAGCFYYWMA TRYHNSESTW MGANIPGFKS KSIWLGYTYS MYWSIVTLST VGYGDLHAVN IEEKIFTIFY MLFNIGLTAY
301: LIGNMTNLIV HTAVRTFFMR DAINEILRYA KKNRLPEGLR EQMLAHLTLK FKTAELQQEQ VLEDLPKAIR SSILQQLFRT TLEKSHLFKG VSDDFIVQLV
401: SEIKAEYFPP KVDIVIQNEI PTDFYIIVSG AVDVVTYKNG MEQFLSKLGS QQMFGEIGVI FNIPQPFTVR TKRLSQVVRI SHHHFKQLVQ PLHEDGKIIH
501: TNFIQHLKGL KNEELAEMPL VSEFLDDLIS EEASMNEAGA QDQQENEIST TTSSLLKTPP TRVIIHGYQP DRRPKSGGNA GKLIHLPDSI ENLLSIAESK
601: FGRRGTTIVM VDGSQVEDLA ALREDDHLYI F

Best Arabidopsis Sequence Match ( AT4G32650.3 )
(BLAST)

001: MSTTTTEARS PLPLLLRRGR SSTALSASTA EARSPLSILQ FRRRSSKDVR NITSVSSSLL PAFGTFIEDD NPSSKPFIVL HFDRRYRLWE LFLVILVGYS
101: AWASLFELAF EKAAEGALLT IDLVVDFFFA VDIILTFFVS YLDNTTYLNV TDHKLIAKRY LKSVAFVMDV ASTLPIQFIY KTITGDVGRG QAFGFLNLLR
201: LWRLRRVAEL FKRLEKDAHF NYFVIRVIKL LCVTIFWIHL AGCILYWIAY HYPRPTDTWI GSQVEDFKER SVWLGYTYSM YWSIVTLTTV GYGDLHAVNS
301: REKTFNMFYM LFNIGLTSYI IGIMTNLVVH GALRTFAMRS AINDILRYTS KNRLPDTMRE QMLAHMQLKF KTAELRQEEV LQDLPKAIRS SINQHLFRSI
401: IEEAYLFKGF PEGLLVQLVS QIQAEYFPPK MEIILQNEIP TDFYVIVSGG VDIIASKGVS EQVLAKLGPG SMAGEIGVVF NIPQPFTVRT RRLSQVIRIG
501: HHKFKEMVQS DNDVDAKMII ANFMTYLKGL NDELKKEIPF LRDLLDDADA QVQETVQSEE TPQSNDEEIV TVSRHENGQK ERRREGVPKR VIIHGQAPPN
601: QDNKNNGDSN GRLIILPDSI QLLFDLAEKK LGKRGSTIAM ADGAHVEQID ALRENDHLYI F

Arabidopsis Description

KAT3KC1 [Source:UniProtKB/TrEMBL;Acc:A0A178UVX9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.