Factsheet for PGSC0003DMT400017804

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 5
plasma membrane 9
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400037608
PGSC0003DMT400065964

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G14570.1	PGSC0003DMT400037608	AT4G32650.1	15299147
AT5G14570.1	PGSC0003DMT400065964	AT4G32650.1	15299147

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g067790.2.1	Tomato	golgi, peroxisome, plasma membrane	96.46	88.91
VIT_14s0066g00850.t01	Wine grape	plasma membrane	72.64	67.69
AT5G14570.1	Thale cress	plastid	65.33	56.19
GSMUA_Achr1P25450_001	Banana	plasma membrane	61.56	56.13
CDX85593	Canola	golgi, peroxisome, plasma membrane, plastid	63.44	55.58
Bra023475.1-P	Field mustard	plastid	62.74	54.96
CDX91044	Canola	golgi, peroxisome, plasma membrane, plastid	64.15	54.18
PGSC0003DMT400043794	Potato	plasma membrane	60.85	51.6
PGSC0003DMT400050658	Potato	plasma membrane	47.17	46.08
PGSC0003DMT400031306	Potato	plasma membrane	36.56	43.91
OQU87011	Sorghum	plasma membrane	50.0	43.8
TraesCS7D01G420900.1	Wheat	golgi, peroxisome, plasma membrane	49.53	43.48
HORVU7Hr1G098550.3	Barley	plasma membrane	49.29	43.27
TraesCS7B01G328700.1	Wheat	golgi, peroxisome, plasma membrane	49.29	43.0
Zm00001d044504_P001	Maize	plasma membrane	49.06	42.89
PGSC0003DMT400092589	Potato	plasma membrane	53.77	42.7
Os01t0547600-01	Rice	plasma membrane	48.58	42.47
PGSC0003DMT400002924	Potato	plasma membrane	52.36	41.89
Zm00001d025783_P001	Maize	extracellular, mitochondrion, plasma membrane, plastid, vacuole	18.87	41.45
PGSC0003DMT400031304	Potato	plasma membrane	51.65	41.32
PGSC0003DMT400050654	Potato	plasma membrane	50.71	40.95
TraesCS7A01G428500.1	Wheat	golgi, peroxisome, plasma membrane	43.63	39.53
PGSC0003DMT400040689	Potato	plasma membrane	48.11	38.93
Zm00001d016468_P001	Maize	plasma membrane	15.33	30.37

Protein Annotations

Gene3D:1.20.1250.20	MapMan:24.2.2.10	MapMan:25.1.3.1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0006810	GO:GO:0008150
GO:GO:0009705	GO:GO:0015112	GO:GO:0015706	GO:GO:0016020	GO:GO:0016021	GO:GO:0055085
InterPro:IPR020846	UniProt:M1A9H2	InterPro:MFS	InterPro:MFS_dom	InterPro:MFS_trans_sf	PFAM:PF07690
EnsemblPlantsGene:PGSC0003DMG400006913	PGSC:PGSC0003DMG400006913	EnsemblPlants:PGSC0003DMT400017804	PFscan:PS50850	PANTHER:PTHR23515	PANTHER:PTHR23515:SF5
SUPFAM:SSF103473	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI000294E22D	SEG:seg	:

Description

Nitrate transporter [Source:PGSC_GENE;Acc:PGSC0003DMG400006913]

Coordinates

chr2:+:26506508..26508700

Molecular Weight (calculated)

45861.5 Da

IEP (calculated)

8.831

GRAVY (calculated)

0.696

Length

424 amino acids

Sequence
(BLAST)

001: MRAFHLAWLS LFSCFFSTFA IPPLLEVIRK DLNLTQTDIG TAGIASFIGS IFSRLAMGPA CDVFGPRVAS ATLSLLTAPV VLSTSLISSA KSFILVRFLI
101: GFSLANFVAS QFWMSSMFSG CTVGLANGFA AGWANVGSGV TQLVMPLVYT LFTTCFNIPS FISWRIAFIF PAIFQAATAI LVLVYGQDLP DGNYKRKITN
201: NQSENFCSLL FNGLKNYRGW ILGLTYGFCF GVELTTDNII AAYFYDRFHV NIEMAGGIAA SFGLANCVSR PVGGIISDKM GKRFGMRGRL WSLWAVQTVA
301: GLMCVLLGRV NTVWASVLVM ACFSLFVQAA SGLTFGIVPF VSKRSLGVIS GMTGSGGTLG AVITQLLLFS GSTKFSTQTS ISIMGLMMIV FTLPITLVYF
401: PKWGGMFCGP SNIDEDDENY HLLH

Best Arabidopsis Sequence Match ( AT5G14570.1 )
(BLAST)

001: MEPSQRNTKP PSFSDSTIPV DSDGRATVFR PFSLSSPHSR AFHLAWLSLF SCFFSTFSIP PLVPVISSDL NLSASTVSAA GIASFAGSIF SRLAMGPLCD
101: LIGPRTSSAI LSFLTAPVIL SASLVSSPTS FILVRFFVGF SLANFVANQY WMSSMFSGNV IGLANGVSAG WANVGAGISQ LLMPLIYSTI AEFLPRAVAW
201: RVSFVFPAIF QVTTAVLVLL YGQDTPHGNR KNSNQNKLTI PEEEEVLVVE EDERSSFVEI LIGGLGNYRA WILALLYGYS YGVELTTDNV IAGYFYERFG
301: VNLEAAGTIA ASFGISNIAS RPAGGMISDA LGKRFGMRGR LWGLWIVQSV AGLLCVLLGR VNSLWGSILV MWVFSVFVQA ASGLVFGVVP FVSTRSLGVV
401: AGITGSGGTV GAVVTQFLLF SGDDVRKQRS ISLMGLMTFV FALSVTSIYF PQWGGMCCGP SSSSEEEDIS RGLLVEDEDE EGKVVSGSLR PVC

Arabidopsis Description

NRT2.7NRT2.7 [Source:UniProtKB/TrEMBL;Acc:A0A178UKX9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.